Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1475 |
Symbol | trmD |
ID | 1183112 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 1619992 |
End bp | 1620744 |
Gene Length | 753 bp |
Protein Length | 250 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637392848 |
Product | tRNA (guanine-N1)-methyltransferase |
Protein accession | NP_791301 |
Protein GI | 28868682 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0336] tRNA-(guanine-N1)-methyltransferase |
TIGRFAM ID | [TIGR00088] tRNA (guanine-N1)-methyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0898876 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCAGCC TGCGCATAGA AGTCATCAGT CTGTTTCCCG AGATGTTTTC CGCCATCAGC GAATACGGCA TTACCAGCCG TGCGGTGAAA CAAGGGCTGT TGCAGCTGAC TTGTTGGAAT CCGCGGGATT ACACCACTGA TCGCCATCAC ACTGTGGATG ATCGCCCATT TGGCGGTGGT CCGGGCATGG TGATGAAGAT CAAGCCCCTT GAAGATGCTC TGGTTCAGGC CAGGCAGGCG GCAGGGGATG CGGCGAAGGT GATTTACCTG TCGCCACAAG GCCGCCAGCT GAATCAGGCT GCGGTACGCG AACTGGCGCA GGAGGAAGCG ATTATCCTCA TCGCCGGTCG TTATGAAGGC ATTGACGAGC GTTTCATTGA AGCTCATGTC GATGAAGAGT GGTCGATTGG TGACTATGTT CTTTCCGGTG GCGAGCTGCC GGCGATGGTC CTGATTGACG CGGTTACGCG GCTGCTGCCC GGAGCTTTAG GGCATGTGGA CTCCGCGGAG GAAGATTCCT TCACGGATGG TCTGCTGGAT TGCCCGCACT ACACCCGACC TGAGGTGTAT GCGGATCAGC GTGTTCCCGA CGTGTTGCTA AGTGGCAATC ACGCGCACAT CCGGCGTTGG CGTTTACAGC AGTCCCTTGG GCGGACCTAT GAACGACGCG CTGATCTTCT GGAAAGCCGC TCGCTTTCTG GAGAAGAGAA GAAGCTGCTG GCGGAATACA TCCGTGAGCG GGACGATAGT TAA
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Protein sequence | MASLRIEVIS LFPEMFSAIS EYGITSRAVK QGLLQLTCWN PRDYTTDRHH TVDDRPFGGG PGMVMKIKPL EDALVQARQA AGDAAKVIYL SPQGRQLNQA AVRELAQEEA IILIAGRYEG IDERFIEAHV DEEWSIGDYV LSGGELPAMV LIDAVTRLLP GALGHVDSAE EDSFTDGLLD CPHYTRPEVY ADQRVPDVLL SGNHAHIRRW RLQQSLGRTY ERRADLLESR SLSGEEKKLL AEYIRERDDS
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