| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1416 |
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| Symbol | secF |
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| ID | 1183053 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 1556503 |
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| End bp | 1557414 |
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| Gene Length | 912 bp |
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| Protein Length | 303 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637392789 |
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| Product | protein-export membrane protein SecF |
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| Protein accession | NP_791242 |
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| Protein GI | 28868623 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0341] Preprotein translocase subunit SecF |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTTACGTA CCATCAACTT CATGGGCGTT CGCAATGTTG CGTTCGCCAT CACGATGCTC
CTTACCGCAC TGGCGTTGTT CAGCTGGTTC CATAAAGGGC TCAACTTTGG TCTGGACTTC
ACCGGCGGTA CGCTCATCGA GCTGACCTAC GAGCGTCCTG CCGATCTGGG CAAGGTTCGT
CAGGAGCTGG TTTCGGCCGG CTACCACGAA GCTGTTGTGC AGAGCTTTGG CGCCACGACT
GACTTGCTGG TGCGCATGCC GGGTGAAGAC CCGCAATTGG GCACTCAGGT CGCTGAAGCG
CTGCGCAAGG CCGGTGCCGA TAACCCGGCA GTGGTCAAGC GTGTCGAGTT CGTCGGCCCG
CAGGTCGGCG AAGAGCTGCG TGATCAGGGT GGCCTCGGCA TGCTGATGGC GCTGGGCGGT
GTTCTGATCT ACCTGGCGTT CCGCTTCCAG TGGAAGTTTG CTGTCGGCGC GATCATTTCG
CTGATCCACG ACGTGGTCGT GACGATGGGT ATCCTGTCGT TCTTCCAGAT TACCTTCGAC
CTGACGGTAT TGGCGGCGGT GCTGGCGATC ATCGGTTACT CGCTGAACGA CACCATTGTG
GTCTTCGACC GGGTTCGCGA AAACTTCCGC CTGCTGCGCA AGGCTTCGCT GATCGAGAAC
ATCAACATCT CCACCACGCA GACACTGCTG CGCACCATTG CCACCTCGGT TTCGACCCTG
TTGGCGATCT CTGCACTGTG GGCGTTCGGT GGCGACAGCC TGGAAGGCTT CTCCATTGCG
TTGTTCATCG GTGTGCTGGC GGGTACCTAC TCGTCGATCT ACATCGCCAA CGTGGTGCTG
ATCTGGCTGA ACCTGACCAC CGAGGATCTG ATCCCTCCGG TGGTTGTCGA GAAGGCCGAC
GACCTCCCGT AG
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| Protein sequence | MLRTINFMGV RNVAFAITML LTALALFSWF HKGLNFGLDF TGGTLIELTY ERPADLGKVR
QELVSAGYHE AVVQSFGATT DLLVRMPGED PQLGTQVAEA LRKAGADNPA VVKRVEFVGP
QVGEELRDQG GLGMLMALGG VLIYLAFRFQ WKFAVGAIIS LIHDVVVTMG ILSFFQITFD
LTVLAAVLAI IGYSLNDTIV VFDRVRENFR LLRKASLIEN INISTTQTLL RTIATSVSTL
LAISALWAFG GDSLEGFSIA LFIGVLAGTY SSIYIANVVL IWLNLTTEDL IPPVVVEKAD
DLP
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