Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1363 |
Symbol | |
ID | 1182999 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 1500812 |
End bp | 1502233 |
Gene Length | 1422 bp |
Protein Length | 473 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637392735 |
Product | sugar transporter family protein |
Protein accession | NP_791190 |
Protein GI | 28868571 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00879] MFS transporter, sugar porter (SP) family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.498359 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTCTTCAA GTAGCACTAC AGCAGCGGCT GACACGCAAG GTCGGCAAAA CGCCTCGCCT AACCGACTGA TTTTCATCTC CGTACTTGTG GCAACCATGG GCGCGCTCGC GTTTGGTTAT GACACCGGTA TTATCGCCGG CGCATTGCCC TTCATGACGC TGCCGGCCGA TCAGGGCGGG CTGGGTTTGA ATGCCTACAG CGAAGGGATG ATCACGGCTT CGCTGATCGT CGGTGCAGCC TTCGGCTCAC TGGCCAGTGG CTATATTTCC GACCGTTTCG GACGACGCCT GACCCTGCGC CTCCTGTCGG TGCTGTTCAT CGCGGGTGCG CTGGGTACGG CCATTGCGCC GTCCATTCCG TTCATGGTCG CCGCGCGCTT CCTGCTGGGT ATCGCGGTGG GTGGCGGCTC GGCGACGGTG CCGGTGTTCA TTGCCGAAAT CGCCGGCCCC TCGCGTCGTG CGCGGCTGGT CAGCCGCAAC GAACTGATGA TCGTCAGCGG CCAGTTGCTC GCCTATGTGC TCAGCGCGGT CATGGCCGCG CTGCTGCACA CGCCGGGCAT CTGGCGCTAT ATGCTGGCGA TCGCGATGGT GCCGGGGGTG TTGCTGCTGA TCGGCACCTT CTTCGTACCT CCTTCGCCGC GCTGGCTGGC GTCCAAAGGC CGTTTTGACG AAGCTCAGGA TGTGCTGGAG CAACTGCGCA GCAACAAGGA CGATGCGCAG CGTGAAGTGG ACGAAATGAA AGCTCAGGAC GAGCAGGCGC GCAATCGTCC CAAGGCAAAG GAATTGCTGC GTCAGCGCTG GGTCATCAAG CTGCTGCTGA TCGGCATCGG TCTGGGCTTT ACCGCACAGC TCACCGGCGT GAACGCCTTC ATGTATTACA CACCGATCAT CCTCAAGAAT ACCGGGATGG GCACCAACGC TGCGCTGACG GCCACCATCG GCAACGGCGT GGTGTCGGTC ATCGCGACCC TGCTGGGCAT CTGGGCAATC GGTCGTTATG GTCGTCGCCA CTTGCTCATG ACCGGTCTGG TGATGGTCAT CCTGATGCAG GCCGCGCTTG GCTGCGTACT GCAATTCATG CCGCAGAACC TGACCCAGAG CTACACGGCC CTCGCCTGCA TTCTGGTGTT CCTGCTGTTC ATGCAAATGT GCATTTCGCC GGTGTACTGG CTGTTGATGT CGGAACTGTT CCCCATGCAG GTGCGGGGTT TGCTGACCGG CACGGCGGTG TCGATGCAGT GGCTGTTCAA CGCCTCGGTG GCGTTTACCT TCCCGATTGC AGTGGATACC ATCGGCAACC CGACGTTCTT CATCTTTGCG GCCATCAACG TCGGCTCGCT GATCTTCGTG TTCCTGTGCC TTCCCGAGAC CAAGGGCAAG TCGCTTGAAC AGATCGAGAA ACACCTGAAG AAAGAGCTGT AA
|
Protein sequence | MSSSSTTAAA DTQGRQNASP NRLIFISVLV ATMGALAFGY DTGIIAGALP FMTLPADQGG LGLNAYSEGM ITASLIVGAA FGSLASGYIS DRFGRRLTLR LLSVLFIAGA LGTAIAPSIP FMVAARFLLG IAVGGGSATV PVFIAEIAGP SRRARLVSRN ELMIVSGQLL AYVLSAVMAA LLHTPGIWRY MLAIAMVPGV LLLIGTFFVP PSPRWLASKG RFDEAQDVLE QLRSNKDDAQ REVDEMKAQD EQARNRPKAK ELLRQRWVIK LLLIGIGLGF TAQLTGVNAF MYYTPIILKN TGMGTNAALT ATIGNGVVSV IATLLGIWAI GRYGRRHLLM TGLVMVILMQ AALGCVLQFM PQNLTQSYTA LACILVFLLF MQMCISPVYW LLMSELFPMQ VRGLLTGTAV SMQWLFNASV AFTFPIAVDT IGNPTFFIFA AINVGSLIFV FLCLPETKGK SLEQIEKHLK KEL
|
| |