| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1302 |
|---|
| Symbol | eda-1 |
|---|
| ID | 1182938 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 1431849 |
|---|
| End bp | 1432523 |
|---|
| Gene Length | 675 bp |
|---|
| Protein Length | 224 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637392676 |
|---|
| Product | 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxyphosphogluconate |
|---|
| Protein accession | NP_791131 |
|---|
| Protein GI | 28868512 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0800] 2-keto-3-deoxy-6-phosphogluconate aldolase |
|---|
| TIGRFAM ID | [TIGR01182] Entner-Doudoroff aldolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACACAGA ACGAAAATAA TCAGCCGCTC ACCAGCATGG CGAACAAGAT TGCCCGGATC
GACGAACTCT GCGCCAAGGC AAAGATTCTG CCGGTCATCA CCATTGCCCG TGATCAGGAC
GTATTGCCAC TGGCCGACGC GCTGGCCGCT GGTGGCATGA CGGCTCTGGA AATCACCCTG
CGCTCGGCGT TCGGACTGAG TGCGATCCGC ATTTTGCGCG AGCAGCGCCC AGAGCTGTGC
ACTGGCGCCG GGACCATTCT GGACCGCAAG ATGCTGGCCG ACGCCGAGGC GGCGGGCTCG
CAATTCATTG TGACCCCCGG CAGCACGCAG GAACTGTTGC AGGCGGCGCT CGACAGCCCG
TTGCCCCTGT TGCCAGGCGT CAGCAGCGCG TCGGAAATCA TGATCGGCTA TGCCTTGGGT
TATCGCCGCT TCAAGCTGTT CCCGGCAGAA ATCAGCGGCG GTGTGGCAGC GATCAAGGCC
TTGGGCGGGC CTTTCAACGA GGTGCGTTTC TGCCCGACGG GCGGCGTCAA CGAGCAGAAC
CTCAAGAACT ACATGGCCTT GCCCAACGTC ATGTGCGTCG GCGGGACATG GATGATTGAT
AACGCCTGGG TCAAGAATGG CGACTGGGGC CGCATTCAGG AAGCCACGGC ACAGGCGCTG
GCGCTGTTTG ACTGA
|
|---|
| Protein sequence | MTQNENNQPL TSMANKIARI DELCAKAKIL PVITIARDQD VLPLADALAA GGMTALEITL
RSAFGLSAIR ILREQRPELC TGAGTILDRK MLADAEAAGS QFIVTPGSTQ ELLQAALDSP
LPLLPGVSSA SEIMIGYALG YRRFKLFPAE ISGGVAAIKA LGGPFNEVRF CPTGGVNEQN
LKNYMALPNV MCVGGTWMID NAWVKNGDWG RIQEATAQAL ALFD
|
|---|
| |