Gene PSPTO_1296 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_1296 
SymboloprB 
ID1182932 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp1426129 
End bp1427490 
Gene Length1362 bp 
Protein Length453 aa 
Translation table11 
GC content56% 
IMG OID637392670 
Productporin B 
Protein accessionNP_791125 
Protein GI28868506 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3659] Carbohydrate-selective porin 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.329329 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGAAGA TCAACAAAGG TAAATCGCTT TCCCGGTTTC AGTTGGTAAG CACGCTGTCG 
GTGCTGGGTG CGATGGGGCT GGCAGGCAAC GTTCATGCTG CCGAAGCATT TGCTGCCGAT
TCGCCGTGGA TGACGGGCGA CTGGAACGGC AAGCGTACCG AACTGCTCGA CAAGGGTTAT
GACTTCTCGC TGGAATACGT TTCCGAGATG GCCAGCAACC TGAAAGGCGG CTCCAACGAC
GACACCACCG GCCGCTACAG CGATCAGTTC GCGCTGGGTA TGAAAGTCGA TTTGCAGAAA
GTTCTAGGTT GGCAGGACGC GGAGTTCAAG CTGGCAATCA CCGAACGTAG CGGTCGCAAT
ATCTCCAATG ATCGGATCGG CGATCCTCGT GCCGGCACGC TCAGTTCCTC GCAGGAAGTC
TGGGGTCGCG GTCAGACCTG GCGTCTGACG CAAATGTGGG TCAAGCAGAA GTATTTTGAT
GGCGCGCTGG ACGTCAAGGC CGGTCGTTTC GGACCGGGCG AAGACTTCAA CAGCTTCCCG
TGCGATTTCC AGAACCTGTC GTTCTGCGGC TCGCAGGTCG GTAACTACGT GAACACCTGG
TACAACTGGC CAATCAGCCA GTGGGCCTTG CGCGTGAAGT ACAACATCAC GCCTGAAGTG
TATGCACAAG TGGGTGTCTA CGAGCAGAAC CCGTCCAACC TGGAAACCGG TAACGGCTTC
AAACTCAGCG GCAGCGGCAC CAAAGGCATG ATCCTGCCGG TCGAACTGGT CTGGACACCG
ACCGTCAATT CTCTGCCCGG TGAATACCGT GTCGGTTACT ACAAAAGCAC GCCGAATGCC
GATGACGTCT ATGAAGACGT AAACGGCCAG CCGCAAGCGG CTACCGGTGC TGCGTTCAAG
TCGCATGACA GCAAGCACGG CTGGTGGGTT GTGGCTCAGC AACAGTTGAC CTCTCACAAC
GGCGATGCGT CGCGCGGTCT GAGCATCTTT GCCAACGCCA CTGTGCATGA CAAGGAAACC
AACTTCGTTG ATAACTACCA GCAGATCGGT CTGACCTACA AAGGCCCGTT CAATTCGCGT
CCGAAGGATG ACATCGGTGT CGGTATTGCG CGTATCCACG TCAACGACGA TGTGCAGGAT
CGTGTACGTC TGGCCAACCA GATCAGCGGC ATCAACGACT TTGACAACCC TGGTTACCTG
CCGGTGCAGA GCACTGAGTA CAACTCGGAA ATCTACTACG GCTTCCACGT CACCAACTGG
CTGACCGTGC GTCCCAACCT GCAGTTCATC AAGCATCCTG GCGGCGTAGA TCAGGTTGAT
GATGCGATTG TGGCGGGCAT CAAGATTCAA TCGAAGTTCT GA
 
Protein sequence
MKKINKGKSL SRFQLVSTLS VLGAMGLAGN VHAAEAFAAD SPWMTGDWNG KRTELLDKGY 
DFSLEYVSEM ASNLKGGSND DTTGRYSDQF ALGMKVDLQK VLGWQDAEFK LAITERSGRN
ISNDRIGDPR AGTLSSSQEV WGRGQTWRLT QMWVKQKYFD GALDVKAGRF GPGEDFNSFP
CDFQNLSFCG SQVGNYVNTW YNWPISQWAL RVKYNITPEV YAQVGVYEQN PSNLETGNGF
KLSGSGTKGM ILPVELVWTP TVNSLPGEYR VGYYKSTPNA DDVYEDVNGQ PQAATGAAFK
SHDSKHGWWV VAQQQLTSHN GDASRGLSIF ANATVHDKET NFVDNYQQIG LTYKGPFNSR
PKDDIGVGIA RIHVNDDVQD RVRLANQISG INDFDNPGYL PVQSTEYNSE IYYGFHVTNW
LTVRPNLQFI KHPGGVDQVD DAIVAGIKIQ SKF