Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1296 |
Symbol | oprB |
ID | 1182932 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 1426129 |
End bp | 1427490 |
Gene Length | 1362 bp |
Protein Length | 453 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 637392670 |
Product | porin B |
Protein accession | NP_791125 |
Protein GI | 28868506 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3659] Carbohydrate-selective porin |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.329329 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGAAGA TCAACAAAGG TAAATCGCTT TCCCGGTTTC AGTTGGTAAG CACGCTGTCG GTGCTGGGTG CGATGGGGCT GGCAGGCAAC GTTCATGCTG CCGAAGCATT TGCTGCCGAT TCGCCGTGGA TGACGGGCGA CTGGAACGGC AAGCGTACCG AACTGCTCGA CAAGGGTTAT GACTTCTCGC TGGAATACGT TTCCGAGATG GCCAGCAACC TGAAAGGCGG CTCCAACGAC GACACCACCG GCCGCTACAG CGATCAGTTC GCGCTGGGTA TGAAAGTCGA TTTGCAGAAA GTTCTAGGTT GGCAGGACGC GGAGTTCAAG CTGGCAATCA CCGAACGTAG CGGTCGCAAT ATCTCCAATG ATCGGATCGG CGATCCTCGT GCCGGCACGC TCAGTTCCTC GCAGGAAGTC TGGGGTCGCG GTCAGACCTG GCGTCTGACG CAAATGTGGG TCAAGCAGAA GTATTTTGAT GGCGCGCTGG ACGTCAAGGC CGGTCGTTTC GGACCGGGCG AAGACTTCAA CAGCTTCCCG TGCGATTTCC AGAACCTGTC GTTCTGCGGC TCGCAGGTCG GTAACTACGT GAACACCTGG TACAACTGGC CAATCAGCCA GTGGGCCTTG CGCGTGAAGT ACAACATCAC GCCTGAAGTG TATGCACAAG TGGGTGTCTA CGAGCAGAAC CCGTCCAACC TGGAAACCGG TAACGGCTTC AAACTCAGCG GCAGCGGCAC CAAAGGCATG ATCCTGCCGG TCGAACTGGT CTGGACACCG ACCGTCAATT CTCTGCCCGG TGAATACCGT GTCGGTTACT ACAAAAGCAC GCCGAATGCC GATGACGTCT ATGAAGACGT AAACGGCCAG CCGCAAGCGG CTACCGGTGC TGCGTTCAAG TCGCATGACA GCAAGCACGG CTGGTGGGTT GTGGCTCAGC AACAGTTGAC CTCTCACAAC GGCGATGCGT CGCGCGGTCT GAGCATCTTT GCCAACGCCA CTGTGCATGA CAAGGAAACC AACTTCGTTG ATAACTACCA GCAGATCGGT CTGACCTACA AAGGCCCGTT CAATTCGCGT CCGAAGGATG ACATCGGTGT CGGTATTGCG CGTATCCACG TCAACGACGA TGTGCAGGAT CGTGTACGTC TGGCCAACCA GATCAGCGGC ATCAACGACT TTGACAACCC TGGTTACCTG CCGGTGCAGA GCACTGAGTA CAACTCGGAA ATCTACTACG GCTTCCACGT CACCAACTGG CTGACCGTGC GTCCCAACCT GCAGTTCATC AAGCATCCTG GCGGCGTAGA TCAGGTTGAT GATGCGATTG TGGCGGGCAT CAAGATTCAA TCGAAGTTCT GA
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Protein sequence | MKKINKGKSL SRFQLVSTLS VLGAMGLAGN VHAAEAFAAD SPWMTGDWNG KRTELLDKGY DFSLEYVSEM ASNLKGGSND DTTGRYSDQF ALGMKVDLQK VLGWQDAEFK LAITERSGRN ISNDRIGDPR AGTLSSSQEV WGRGQTWRLT QMWVKQKYFD GALDVKAGRF GPGEDFNSFP CDFQNLSFCG SQVGNYVNTW YNWPISQWAL RVKYNITPEV YAQVGVYEQN PSNLETGNGF KLSGSGTKGM ILPVELVWTP TVNSLPGEYR VGYYKSTPNA DDVYEDVNGQ PQAATGAAFK SHDSKHGWWV VAQQQLTSHN GDASRGLSIF ANATVHDKET NFVDNYQQIG LTYKGPFNSR PKDDIGVGIA RIHVNDDVQD RVRLANQISG INDFDNPGYL PVQSTEYNSE IYYGFHVTNW LTVRPNLQFI KHPGGVDQVD DAIVAGIKIQ SKF
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