Gene PSPTO_1272 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_1272 
Symbol 
ID1182908 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp1395310 
End bp1396437 
Gene Length1128 bp 
Protein Length375 aa 
Translation table11 
GC content60% 
IMG OID637392647 
Producthypothetical protein 
Protein accessionNP_791102 
Protein GI28868483 
COG category[R] General function prediction only 
COG ID[COG0795] Predicted permeases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGATTGTCT TCCGTTATCT GTCCCGAGAA GTGCTGCTTA CCCTGAGTGC GGTCAGCGCC 
GTGCTGCTGG TGTTCATCAT GAGCGGGCGC TTCATCAAGT ACCTGGCGCA GGCTGCGTCC
GGCGCGCTTG ATCCTGGCGT GCTGTTCCTG ATCATGGGCT TTCGCCTGCC GGGTTTTTTG
CAGGTGATCC TGCCGCTGGG CCTGTTCCTC GGCATCCTCA TGGCGTACGG GCGCCTGTAT
CTGGAGAGTG AAATGACCGT GCTGGCCGCG ACCGGCATGA GCCAGCAGCG TCTGCTTGCT
ATCACCATGG GCCCGGCAGC GTTGGTCGGG TTGCTGGTCG CCTGGCTGAG TTTCAGCCTG
GCTCCCCAGG GCGCTGCGCA GTTTTCGCAA CTGATTAACC AGCAGGACGC CATGACCGAG
TTCGACACGC TGGTGCCGGG ACGTTTCCAG GCATTGCGTG ACGGTACGCG TATCACCTAC
ACCAAAGAGC TGTCGGAAGA TCGCTCGCAG CTGGCGGGCG TGTTCATCTC TGAAAAGCGC
ATGTCCAACG ACAAGAGCAA GGACAACGGC ATTACCGTGC TGGTGGCCGA GAAGGGGCAC
CAGGAGGTCC AGCCCAATGG CAGTCGCTTC CTGATCCTCG AAAACGGCTA CCGCTACGAT
GGCAATCCGG GTGCCGCTGA CTACCGCGTG GTCAAGTACG ACACGTATGG GGCGGCGTTG
CCCAAGCCGG AAATCAGCGA AGAAATCACT GACCGCGAAG CCATTCCGAC CAGCGAGCTG
TTCGGCAACC CTGCACCGCG TTCCGTTGCT GAATTGCAGT GGCGCATTTC GCTGCCGCTG
TCGGTGTTCA TCGTCACCTT GATGGCCATC CCGTTGTCAC GGGTCAATCC GCGTCAGGGC
CGTTACCTGA AGCTGCTGCC GGCGATCCTT CTGTACATGT CTTACCTGGC CATTCTGATT
TCGGTGCGCA GTTCGCTGGA GAAAGGCAAG CTGCCCCTCA GCCTCGGCAT GTGGTGGGTT
CATGGCATTT ATCTGGGCAT CGGTCTGGTG CTGTTTTACT GGGAGCCTCT GCGTCTGAAG
ATGGCGAGTC GTCGCAGCGT CACGGAGGTG ACTCGTGGTC AAGCTTGA
 
Protein sequence
MIVFRYLSRE VLLTLSAVSA VLLVFIMSGR FIKYLAQAAS GALDPGVLFL IMGFRLPGFL 
QVILPLGLFL GILMAYGRLY LESEMTVLAA TGMSQQRLLA ITMGPAALVG LLVAWLSFSL
APQGAAQFSQ LINQQDAMTE FDTLVPGRFQ ALRDGTRITY TKELSEDRSQ LAGVFISEKR
MSNDKSKDNG ITVLVAEKGH QEVQPNGSRF LILENGYRYD GNPGAADYRV VKYDTYGAAL
PKPEISEEIT DREAIPTSEL FGNPAPRSVA ELQWRISLPL SVFIVTLMAI PLSRVNPRQG
RYLKLLPAIL LYMSYLAILI SVRSSLEKGK LPLSLGMWWV HGIYLGIGLV LFYWEPLRLK
MASRRSVTEV TRGQA