Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1272 |
Symbol | |
ID | 1182908 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 1395310 |
End bp | 1396437 |
Gene Length | 1128 bp |
Protein Length | 375 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637392647 |
Product | hypothetical protein |
Protein accession | NP_791102 |
Protein GI | 28868483 |
COG category | [R] General function prediction only |
COG ID | [COG0795] Predicted permeases |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | TTGATTGTCT TCCGTTATCT GTCCCGAGAA GTGCTGCTTA CCCTGAGTGC GGTCAGCGCC GTGCTGCTGG TGTTCATCAT GAGCGGGCGC TTCATCAAGT ACCTGGCGCA GGCTGCGTCC GGCGCGCTTG ATCCTGGCGT GCTGTTCCTG ATCATGGGCT TTCGCCTGCC GGGTTTTTTG CAGGTGATCC TGCCGCTGGG CCTGTTCCTC GGCATCCTCA TGGCGTACGG GCGCCTGTAT CTGGAGAGTG AAATGACCGT GCTGGCCGCG ACCGGCATGA GCCAGCAGCG TCTGCTTGCT ATCACCATGG GCCCGGCAGC GTTGGTCGGG TTGCTGGTCG CCTGGCTGAG TTTCAGCCTG GCTCCCCAGG GCGCTGCGCA GTTTTCGCAA CTGATTAACC AGCAGGACGC CATGACCGAG TTCGACACGC TGGTGCCGGG ACGTTTCCAG GCATTGCGTG ACGGTACGCG TATCACCTAC ACCAAAGAGC TGTCGGAAGA TCGCTCGCAG CTGGCGGGCG TGTTCATCTC TGAAAAGCGC ATGTCCAACG ACAAGAGCAA GGACAACGGC ATTACCGTGC TGGTGGCCGA GAAGGGGCAC CAGGAGGTCC AGCCCAATGG CAGTCGCTTC CTGATCCTCG AAAACGGCTA CCGCTACGAT GGCAATCCGG GTGCCGCTGA CTACCGCGTG GTCAAGTACG ACACGTATGG GGCGGCGTTG CCCAAGCCGG AAATCAGCGA AGAAATCACT GACCGCGAAG CCATTCCGAC CAGCGAGCTG TTCGGCAACC CTGCACCGCG TTCCGTTGCT GAATTGCAGT GGCGCATTTC GCTGCCGCTG TCGGTGTTCA TCGTCACCTT GATGGCCATC CCGTTGTCAC GGGTCAATCC GCGTCAGGGC CGTTACCTGA AGCTGCTGCC GGCGATCCTT CTGTACATGT CTTACCTGGC CATTCTGATT TCGGTGCGCA GTTCGCTGGA GAAAGGCAAG CTGCCCCTCA GCCTCGGCAT GTGGTGGGTT CATGGCATTT ATCTGGGCAT CGGTCTGGTG CTGTTTTACT GGGAGCCTCT GCGTCTGAAG ATGGCGAGTC GTCGCAGCGT CACGGAGGTG ACTCGTGGTC AAGCTTGA
|
Protein sequence | MIVFRYLSRE VLLTLSAVSA VLLVFIMSGR FIKYLAQAAS GALDPGVLFL IMGFRLPGFL QVILPLGLFL GILMAYGRLY LESEMTVLAA TGMSQQRLLA ITMGPAALVG LLVAWLSFSL APQGAAQFSQ LINQQDAMTE FDTLVPGRFQ ALRDGTRITY TKELSEDRSQ LAGVFISEKR MSNDKSKDNG ITVLVAEKGH QEVQPNGSRF LILENGYRYD GNPGAADYRV VKYDTYGAAL PKPEISEEIT DREAIPTSEL FGNPAPRSVA ELQWRISLPL SVFIVTLMAI PLSRVNPRQG RYLKLLPAIL LYMSYLAILI SVRSSLEKGK LPLSLGMWWV HGIYLGIGLV LFYWEPLRLK MASRRSVTEV TRGQA
|
| |