| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1250 |
|---|
| Symbol | |
|---|
| ID | 1182886 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 1373711 |
|---|
| End bp | 1374394 |
|---|
| Gene Length | 684 bp |
|---|
| Protein Length | 227 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637392625 |
|---|
| Product | CsgG family protein |
|---|
| Protein accession | NP_791080 |
|---|
| Protein GI | 28868461 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1462] Uncharacterized protein involved in formation of curli polymers |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAGAAAC TTCAGCAGTT TTTGGTTTCA GGGATGACAA CAGCGGCGTT AGTGCTGATG
GCTGGTTGTG CAACGGAAAG CTCGCGGGCG CTGCCTGTGG CAAAGGTTGA AAGTGCTGGT
GTGGCTTATG CCGGCAAGCG TTATCCGGTG GCGGTCGGCA AGTTCGATAA CCGCTCCAGT
TACATGCGCG GGATCTTTTC CGATGGTGTG GATCGGCTTG GTGGTCAGGC CAAGACCATC
CTGATCACCC ACATGCAGCA GACCAACCGG TTCAGTGTGC TGGACCGCGA CAACATGGAG
GAAATCAAGC AGGAAGCCTC CATCAAATCC ACCGCCCAGC GCCTGAAAGG CGCTGATTAC
GTGGTGACTG GCGATGTGAC CGAGTTTGGT CGCAAGGAAG TCGGCGATCA GCAACTGTTC
GGTCTGCTGG GCCGTGGCAA ATCGCAGATT GCCTACGCAA AAGTCGCGCT GAACATCGTC
AATATCAGCA CCTCGGAAGT GGTGTACTCC ACTCAGGGTG CGGGCGAGTA CGAGCTTTCC
AACCGGGAAG TCATCGGCTT TGGTGGCACC GCCAGTTATG ACTCGACACT CAACGGCAAG
GTTCTGGACC TGGCCATGCG CGAAGCCGTC AACAACATGG TGCGTGCGCT CGATAGCGGT
GCCTGGAAAC CAACTGCCAA CTGA
|
|---|
| Protein sequence | MKKLQQFLVS GMTTAALVLM AGCATESSRA LPVAKVESAG VAYAGKRYPV AVGKFDNRSS
YMRGIFSDGV DRLGGQAKTI LITHMQQTNR FSVLDRDNME EIKQEASIKS TAQRLKGADY
VVTGDVTEFG RKEVGDQQLF GLLGRGKSQI AYAKVALNIV NISTSEVVYS TQGAGEYELS
NREVIGFGGT ASYDSTLNGK VLDLAMREAV NNMVRALDSG AWKPTAN
|
|---|
| |