| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1232 |
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| Symbol | algA |
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| ID | 1182868 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 1351082 |
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| End bp | 1352533 |
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| Gene Length | 1452 bp |
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| Protein Length | 483 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637392607 |
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| Product | alginate biosynthesis protein AlgA |
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| Protein accession | NP_791062 |
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| Protein GI | 28868443 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0662] Mannose-6-phosphate isomerase
[COG0836] Mannose-1-phosphate guanylyltransferase |
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| TIGRFAM ID | [TIGR01479] mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.714262 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTCCAG TGATCTTGTC AGGCGGTAGC GGTTCGCGAC TCTGGCCGCT TTCGCGTAAA
CAATTCCCTA AACAGTTCCT GGCACTGACC GGCGAGCACA CCCTGTTTCA GCAAACGCTG
CAACGTCTGG TGTTCGAGGG CATGCAGGAG CCTATCGTGG TCTGCAACAA GGACCACCGT
TTCATCGTCA ACGAGCAACT GGCTGCGCTA AACCTGGAAA CCCAGGCCAT CCTGATGGAG
CCGTTCGGCC GCAACACCGC GCCGGCCGTC GCGCTGACCG CTATGAAACT GGTCAATGAA
GGCAATGACG GCCTGATGCT GGTGCTGCCT GCCGACCACG TCATCGAAGA CCAGAAAGCT
CTGCAACGCG CACTGGCGCT GGCAACCGTC ACTGCCGAAC GTGGCGAAAT GGTGCTGTTC
GGCGTGCCGG CCAACAAGCC TGAAACCGGC TATGGCTACA TCAAATCGAC CGCCGATGCC
CTGCTGCCGG AAGGCGTCAG CCGCGTGTCG CAGTTCGTCG AAAAGCCTGA CGAAAAACGC
GCCAAAGAGT TCGTCGAAGC CGGTGGTTAC TACTGGAACA GCGGCATGTT CCTGTTCCGC
GCCAGCCGCT TCCTGGAAGA ACTGAAAAAG CACGACCCGG ACATCTATGA CACCTGCCTG
CTGACCCTTG AGCGCAGCGT GCAGGACGGC GACGCGCTTG AAATCGACGC CTCTACCTTC
GCCTGCTGCC CGGACAACTC CATCGACTAC GCGGTCATGG AAAAAACCCA GCGCGCCTGC
GTTGTGCCGC TGTCGGCTGG CTGGAGCGAT GTCGGCTGCT GGTCGTCGCT GTGGGAAGTC
AACGCCAAGG ACGCCCACGG CAACGTCACC AAGGGCGACG TGGTCATTCA GGACAGCCGC
AACTGCATGA TCCACGGCAA TGGCAAACTG GTGTCGGTGA TCGGTCTGGA CAACATCGTG
GTCGTCGAAA CCAAAGACGC GATGATGATT GCCCACAAGG ACAAGGTTCA GGGCGTCAAG
CAGATGGTCG CCACTCTGAA TGAACAGGGC CGCACCGAGA CTCAGAACCA CCTTGAAGTG
TACCGTCCGT GGGGCTCTTA CGACTCGGTG GACATGGGCG GCCGCTTCCA GGTCAAGCGC
ATCTCGGTCA AGCCGGGCGC GTGCCTGTCG CTGCAAATGC ACCACCACCG CGCCGAACAC
TGGATCGTGG TATCCGGCAC AGCGCAGGTG ACCTGCGACG AGAACGTGTT CCTGCTCACC
GAAAACCAGT CCACCTACAT CCCGATCGCC TCGGTCCATC GCCTGCGCAA CCCAGGCAAG
ATCCCGTTGG AAATCATCGA AGTGCAATCG GGCAGCTACC TGGGCGAGGA CGATATCGAG
CGTTTCGAAG ATATCTACGG TCGCTCGAAT GCGCTGGAAG CAGGTGTTAA GACGCAGACG
ATTGCTCGCT GA
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| Protein sequence | MIPVILSGGS GSRLWPLSRK QFPKQFLALT GEHTLFQQTL QRLVFEGMQE PIVVCNKDHR
FIVNEQLAAL NLETQAILME PFGRNTAPAV ALTAMKLVNE GNDGLMLVLP ADHVIEDQKA
LQRALALATV TAERGEMVLF GVPANKPETG YGYIKSTADA LLPEGVSRVS QFVEKPDEKR
AKEFVEAGGY YWNSGMFLFR ASRFLEELKK HDPDIYDTCL LTLERSVQDG DALEIDASTF
ACCPDNSIDY AVMEKTQRAC VVPLSAGWSD VGCWSSLWEV NAKDAHGNVT KGDVVIQDSR
NCMIHGNGKL VSVIGLDNIV VVETKDAMMI AHKDKVQGVK QMVATLNEQG RTETQNHLEV
YRPWGSYDSV DMGGRFQVKR ISVKPGACLS LQMHHHRAEH WIVVSGTAQV TCDENVFLLT
ENQSTYIPIA SVHRLRNPGK IPLEIIEVQS GSYLGEDDIE RFEDIYGRSN ALEAGVKTQT
IAR
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