| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1079 |
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| Symbol | rfbA |
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| ID | 1182714 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 1183678 |
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| End bp | 1184568 |
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| Gene Length | 891 bp |
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| Protein Length | 296 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637392457 |
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| Product | glucose-1-phosphate thymidylyltransferase |
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| Protein accession | NP_790913 |
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| Protein GI | 28868294 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1209] dTDP-glucose pyrophosphorylase |
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| TIGRFAM ID | [TIGR01207] glucose-1-phosphate thymidylyltransferase, short form |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.857116 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACCACCA TTAATCGTAA AGGCATCATC CTGGCCGGCG GATCGGGCAC TCGCCTGCAC
CCGCTTACCC TTGGCGTATC CAAGCAGATG CTGCCTATCT ACGACAAGCC GATGATTTTC
TACCCTCTGT CGGTGCTGAT GCTGGCGGGC ATGCGTGAAG TCCTGATCAT CTCTACGCCA
GAAGACTTGC CAAGCTTTCG CAAGCTGCTG GGCGACGGCA GTCAGTACGG CATTGAACTC
ACTTATGCCG AACAACCTAC GCCCGATGGC CTGGCACAAG CGTTCATCAT TGGCGAAGAG
TTCATCGGCG AAGACCCTTG CTGCCTGATT CTGGGCGACA ACATCTTTTA CGGTCAGCAC
TTCTCCGACA ACCTGCGCTC CGCCAGTCAG CAGACTGAAG GCGCCACGGT TTTTGGCTAC
CACGTCTCCG ATCCGGAGCG CTTTGGTGTT GTCGAGTTCG ACGAAACCGG CCGTGCCTTG
AGCATCGAAG AAAAGCCTGC CGCACCGAAA TCGAGCTACG CGGTAACCGG GCTGTACTTC
TACGACAATC AGGTGGTCGA AATCGCGAAG AGCATCAAAC CCTCTGAGCG TGGCGAACTG
GAAATCACCG ACGTGAACCG TGCGTACCTC GAGCAGAAGA GTCTGACCGT AGAAATTCTC
GGTCGCGGCT TTGCATGGCT CGACACAGGT ACTCATGAGT CGCTGCTGGA AGCGAGCCAT
TTTGTGCACA CCATTGAGCA GCGTCAGGGC TGGAAAGTAG CTTGCCTGGA AGAGATCGCC
TACACCAACG GCTGGATCAC TGCCTCGCAA CTGGGTGAAC AAGCTCAGAA ACTGAAGAAA
ACCGGCTACG GGCAGTATCT GCAGAAGCTG CTCGATCTGG GCTCGTTCTA A
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| Protein sequence | MTTINRKGII LAGGSGTRLH PLTLGVSKQM LPIYDKPMIF YPLSVLMLAG MREVLIISTP
EDLPSFRKLL GDGSQYGIEL TYAEQPTPDG LAQAFIIGEE FIGEDPCCLI LGDNIFYGQH
FSDNLRSASQ QTEGATVFGY HVSDPERFGV VEFDETGRAL SIEEKPAAPK SSYAVTGLYF
YDNQVVEIAK SIKPSERGEL EITDVNRAYL EQKSLTVEIL GRGFAWLDTG THESLLEASH
FVHTIEQRQG WKVACLEEIA YTNGWITASQ LGEQAQKLKK TGYGQYLQKL LDLGSF
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