Gene PSPTO_1077 details

Gene Information

• Locus tag: PSPTO_1077
• Symbol: rfbC-1
• ID: 1182712
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: -
• Start bp: 1181491
• End bp: 1182036
• Gene Length: 546 bp
• Protein Length: 181 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 637392455
• Product: dTDP-4-dehydrorhamnose 3,5-epimerase
• Protein accession: NP_790911
• Protein GI: 28868292
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes
• TIGRFAM ID: [TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATGCAA CACGCCTCGC CATTCCAGAC GTCATCGTAT TCGAGCCCAA AACCTTCGGA 
GACGATCGTG GCTTTTTCTT TGAAAGCTTC AACCAGAAGG CGTTCGAGGA GGTCGTTGGC 
CGGTCGGTGA AATTTGTTCA GGACAACCAC TCTCGCTCGG TGAAAGGGGT GCTGCGCGGC 
TTGCATTACC AAATTCAACA ACCACAGGGC AAGCTTGTCC GGGTGACTGT GGGCGAGGTG 
TTCGACGTCG CAGTCGACTT GCGTAAAAGC TCACCGACCT TCGGCAAGTG GGTGGGTCTG 
CATCTCACCG CCGAAAACAA GAAACAGCTC TGGATACCGG AAGGCTTTGC TCACGGGTTC 
ATCGTTTTGT CCGAAAGCGC AGAGTTTCTC TACAAGACGA CAGACTACTG GGCGCCGGAA 
CACGAGCGCA GCCTTGCCTG GAATGACGCC ACCGTAGGCA TTGAATGGCC GTTCAGCGAA 
ACGCCGTCCC TGTCCGCCAA AGACCAAAAG GCCGTCGCAT TCGAAGACGC AGAGGTGTTC 
GCTTAA 

 

Protein sequence

MNATRLAIPD VIVFEPKTFG DDRGFFFESF NQKAFEEVVG RSVKFVQDNH SRSVKGVLRG 
LHYQIQQPQG KLVRVTVGEV FDVAVDLRKS SPTFGKWVGL HLTAENKKQL WIPEGFAHGF 
IVLSESAEFL YKTTDYWAPE HERSLAWNDA TVGIEWPFSE TPSLSAKDQK AVAFEDAEVF 
A