| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1075 |
|---|
| Symbol | |
|---|
| ID | 1182710 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 1179310 |
|---|
| End bp | 1180674 |
|---|
| Gene Length | 1365 bp |
|---|
| Protein Length | 454 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637392453 |
|---|
| Product | O-antigen ABC transporter, ATP-binding protein, putative |
|---|
| Protein accession | NP_790909 |
|---|
| Protein GI | 28868290 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1134] ABC-type polysaccharide/polyol phosphate transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.164394 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCATCTG ATCAACCGGT TATCAGCGTA CAAAACGTCT CGAAGTGTTT TTACACCTAC
GACAAGCCCC ACGACCGCCT GAAACAGGCA CTGGTGCCAA AACTCCAGCG CTGGTCGGGT
CAGCCGACCA CTACCTATGG CAAAGAATTC TGGGCGCTGC GCGACATCAG CTTTGATGTC
GGCAAGGGCG AAACAGTCGG TATCGTCGGT CGCAACGGCT CCGGTAAATC TACGTTGCTG
CAAATCATTT GCGGCACGTT GAGCCCCACT ATCGGTGAGA TTCAGACCCG CGGCCGGGTA
GCGGCATTGC TCGAGCTGGG CTCAGGCTTC AACCCCGAGT TCACCGGGCG TGAAAACGTT
TACCTGAACG CAGCAGTACT GGGCCTGACG CGTGACGAAG TGGACGAACG CTTTGACGCG
ATCGCAGGTT TTGCCGACAT CGGCGAGTTC CTTGATCAAC CCGTCAAGTC TTACTCGAGC
GGTATGGCCG TGCGCCTGGC GTTTGCCGTT CAGGCGCAAG TTGATCCTGA AATTCTCGTT
GTGGATGAAG CGCTGTCAGT AGGCGACGCG CGATTCCAGG CCAAGTGTTT CGAGCGCCTG
CGACAGCTGA AAGAAAACGG TACCAGTATC CTGCTGGTCA CCCATTCCAG CGAGCAGGTC
GTCACCCACT GCAATCGCGC CATTCTGCTG GAAAAGAGCA GAATCGAAAT GATTGGCGAA
TCGCGCCCGG TCATCAACCG TTACACCGAC CTGCTGTTCG GACGCGACAA GAGCCCTATC
ACCGATAAGA GCCTGGACCT TGCCGAAGCC GAACGCGTAG AGGCAGCTCC TGTCGAAACC
GACAAGATTG CGCTGCGCTT CGACGAAGAC GTATACGCCA GCAGGCCTGG CTATAACCCC
CATGAATACC GCTGGGGAGA CGGGGCCGCA ACGCTACTGG ACTTCCATAT GAGTGCTTCG
GGACGTGAGT TTCCCAACAG TGTCGAGTCT GGAGAGGAAA TCGTTCTTGA CCTGGCGTTG
CAGTTCAACA GCACGGTGGT CAACCCGATC ATCGGTTTTA CGATCAAGAC CAAAGAGGGC
GTCACCGTTT ACGGTACTAA CTCGTACATG CAGGATTGCG AAGGCACAGG CCTGATAGGC
AACGCTGGCA ATCAGGCAAA AGCACGTGTG AAATTCAGAA ATGCACTGGC AACCGGTGAT
TACTTCATTT CCATCGGCAT TGCCTCCCGG CAAAGTGAAG AAATCGTGCC CCACGACAGA
CGTTATGACT CAATACACTT TGTCGTAGAA CCTACTCCGA AGCTTCTGGG TTTGATAGAC
CTGGGCGCCT CCATGGAAAT TGAACCGGTA ATTGTCGATG TTTGA
|
|---|
| Protein sequence | MSSDQPVISV QNVSKCFYTY DKPHDRLKQA LVPKLQRWSG QPTTTYGKEF WALRDISFDV
GKGETVGIVG RNGSGKSTLL QIICGTLSPT IGEIQTRGRV AALLELGSGF NPEFTGRENV
YLNAAVLGLT RDEVDERFDA IAGFADIGEF LDQPVKSYSS GMAVRLAFAV QAQVDPEILV
VDEALSVGDA RFQAKCFERL RQLKENGTSI LLVTHSSEQV VTHCNRAILL EKSRIEMIGE
SRPVINRYTD LLFGRDKSPI TDKSLDLAEA ERVEAAPVET DKIALRFDED VYASRPGYNP
HEYRWGDGAA TLLDFHMSAS GREFPNSVES GEEIVLDLAL QFNSTVVNPI IGFTIKTKEG
VTVYGTNSYM QDCEGTGLIG NAGNQAKARV KFRNALATGD YFISIGIASR QSEEIVPHDR
RYDSIHFVVE PTPKLLGLID LGASMEIEPV IVDV
|
|---|
| |