Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1070 |
Symbol | |
ID | 1182705 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 1169689 |
End bp | 1170639 |
Gene Length | 951 bp |
Protein Length | 316 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 637392448 |
Product | lipopolysaccharide biosynthesis protein |
Protein accession | NP_790904 |
Protein GI | 28868285 |
COG category | [R] General function prediction only |
COG ID | [COG0110] Acetyltransferase (isoleucine patch superfamily) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.710053 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGCAGCG GTAAGGATTT TTTCGTTCAC AGCCACGCCC TGTGCGAGTC AGAGAATATC GGTAAGGATT CGCGAGTATG GGCGTTCGCT CATATCTTGC CTGGCGCCCG TCTGGGTAGC GAATGCAACG TCTGCGACAA CGTATTCATC GAGAACGACG TTATCATTGG CGATCGAGTG ACACTGAAGT GCGGCGTACA GGTCTGGGAT GGCATTACCA TTGAGGACGA TGTATTCATC GGCCCCAACG CCACCTTTAC CAATGACCTG TTCCCGCGCA GCAAGGTCTA TCCGCAAACC TTTGCTCGCA CCATCATCCG AAAAGGCGCA TCTCTGGGCG CCAACTGCAC GATCCTGCCG GGTATTACAA TCGGGATCAA CGCAATGGTG GGTGCAGGGG CTGTGGTGAC ACGCTCAGTG CCGCCTAACG CGATAGTTGT CGGCAACCCG GCCAAGATCA TTGGTTATGT GGACGCCAAG CCTGTCAACG CCAACAGTGA AACGCGAGCA GAACAGAAAG CGCCTGGCGT AACCGCTACC TCCGTCAAGA ACGTTACGCT GCACACCATG AATGAAGTGG CTGACATTCG CGGCAGTTTG TCGGCGGGCG AATTCGAGCG CTCAGTGCCC TTCAAGACCG AACGTTACTT CCTTGTTTAT GACGTTCCGA CTGCCGAAAC CCGAGGCGAG CATGCTCACC GCATCTGTCA CCAGTTTCTG GTAGCGGTAA AGGGCTCGGT TCACGTTGTA GCAGACGACG GCGTTAATCG TGAAGAGTTT ATTCTCGACA AACCGAATCA GGGCATACAT TTGCCTCCAA TGACTTGGGG TATTCAGTAT CGCTACTCTC AGGATGCCGT GCTGCTGGTG TTCGCTTCGC ACTACTATGA TGCCGGGGAC TACATTCGTA ATTACGAAGA GTTTAAGTCC CTGATCGCGA ACGCTGAATA A
|
Protein sequence | MSSGKDFFVH SHALCESENI GKDSRVWAFA HILPGARLGS ECNVCDNVFI ENDVIIGDRV TLKCGVQVWD GITIEDDVFI GPNATFTNDL FPRSKVYPQT FARTIIRKGA SLGANCTILP GITIGINAMV GAGAVVTRSV PPNAIVVGNP AKIIGYVDAK PVNANSETRA EQKAPGVTAT SVKNVTLHTM NEVADIRGSL SAGEFERSVP FKTERYFLVY DVPTAETRGE HAHRICHQFL VAVKGSVHVV ADDGVNREEF ILDKPNQGIH LPPMTWGIQY RYSQDAVLLV FASHYYDAGD YIRNYEEFKS LIANAE
|
| |