| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1052 |
|---|
| Symbol | |
|---|
| ID | 1182686 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 1149242 |
|---|
| End bp | 1150126 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637392431 |
|---|
| Product | senescence marker protein-30 family protein |
|---|
| Protein accession | NP_790888 |
|---|
| Protein GI | 28868269 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3386] Gluconolactonase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATGCCG AACTGATAGT CGATGCACAG AATGCAACGG GCGAAAGCCC GGTCTGGAGC
GTGCGTGAAC AAGCGTTGTA CTGGGTGGAT ATTCCCAACG GCGAGCTGCA TCGCTGGGAT
TCCAGTCAGG ACCGCACGCG CAGTTGGAAA GCCCCGCAAA TGCTGGCCTG TATCGCTGCC
GACAGCCGTG GCGGCTGGAT TGCCGGGATG GAGAACGGCC TCTATCACTT GCAGCCCTGC
GACGACGGCA GCCTGATCAG TACCCTGCTG GCCAGCGTTG AGCATGCTCA AACGGGCATG
CGCTTCAATG ATGGCCGTTG TGATCGCCAA GGGCGCTTCT GGGCGGGCAC CATGCTGATG
GACATGGCAG CGGGCGCAGT GGTTGGTGCA CTGTATCGCT ACAGCGCCGG GCAAAAGACA
CTGGAGGCGC AACTCAAAGA CCTGATCGTC CCCAACGGCC TGGCGTTCAG CCCGGACGGC
AAAACCATGT ACCTGTCCGA TTCACACCCC GCTGTACAAA AGATCTGGGC TTTCGATTAC
GACACTGACA GCGGCACGCC ACATGACCGC CGACTGTTCG TGGACATGAA CAACTATCTG
GGCCGCCCGG ACGGCGCTGC AATCGACGCA GACGGCTGTT ACTGGATCTG CGGCAACGAC
GCGGGTCTGG TCCATCGCTT TACCCCCAAC GGCAAACTCG ACCGCTCGCT GGTCGTGCCC
GTGAAAAAAC CTGCCATGTG TGCGTTTGGT GGCCCGAACC TGGACACCCT GTTCGTGACC
TCCATTCGCC CAGGTGGCGA TCTCAGCGAC CAGCCGCTCG CCGGTGGTGT GTTCGCTTTG
CGACCTGGCG TCAAAGGCCT GGAGGAACCC GTTTTTCAGG GCTGA
|
|---|
| Protein sequence | MDAELIVDAQ NATGESPVWS VREQALYWVD IPNGELHRWD SSQDRTRSWK APQMLACIAA
DSRGGWIAGM ENGLYHLQPC DDGSLISTLL ASVEHAQTGM RFNDGRCDRQ GRFWAGTMLM
DMAAGAVVGA LYRYSAGQKT LEAQLKDLIV PNGLAFSPDG KTMYLSDSHP AVQKIWAFDY
DTDSGTPHDR RLFVDMNNYL GRPDGAAIDA DGCYWICGND AGLVHRFTPN GKLDRSLVVP
VKKPAMCAFG GPNLDTLFVT SIRPGGDLSD QPLAGGVFAL RPGVKGLEEP VFQG
|
|---|
| |