| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1025 |
|---|
| Symbol | |
|---|
| ID | 1182659 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 1118505 |
|---|
| End bp | 1119704 |
|---|
| Gene Length | 1200 bp |
|---|
| Protein Length | 399 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637392404 |
|---|
| Product | transglycosylase, putative |
|---|
| Protein accession | NP_790861 |
|---|
| Protein GI | 28868242 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2821] Membrane-bound lytic murein transglycosylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCTGCTGA TGATGTTCTC CCTCAAACCG TGGTCGCGGG GCCTGGCGCT GGCTTTGCCA
TTGGCCGTTT TGCTGGCGGC GTGTGACAAG TCCGATAAAC CGGTAACGCC ACCGGCTGCG
CCGCACACCA CGTACACTCA GGCCTCTTGG GAAGCGCTGC CAGCGGTTTC CGATGCCGAT
TTGCAAGCCG GTTTCGCCGC ATGGCGCAGC GCGTGTGTTC GTTTGAAGGC CGATGCGGTC
TGGGGGCCGA CGTGTGCGGC GGCGGCGAGC GTTGCGGCGG CGCCGGATGC GACGCAGATT
CGTACGTTTT TGCAGGGCCA GTTGCAGGTT TACAGCTTGC GTGCCGACGG TGGCAGTGCG
GATGGCCTGA TTACCGGCTA TTACGAGCCT GTTTACCCTG GCAGCCTGAC CCGGACAGAG
ACGGCCAATG TGCCGGTATA TGGCATTCCC GATGACCTGA TCGTGGTCAA TCTGGACAGC
ATTTACCCTG AGCTTAAAGG CAAGCGTCTG CGCGGCCGGC TTGAGGGGCG GGTGCTCAAG
CCTTACGACG ATGCCGCGAC CATCAACGCG CAAGGTTTGA ATGCGCCGGT GATCGCCTGG
CTGACCGACC CGATGGACGT GCAGTTCCTG CAGATTCAGG GCTCCGGGCG GGTCAGTCTG
GAAGACGGCT CACAGTTGCG TCTGGGCTAC GCCGATCAGA ACGGTCGTCC TTATCGCGCC
ATCGGCCGTT GGCTGGTGGA GCAGGGCGAG TTGAAGAAGG AAGACGTGAC GATGGGCAGC
ATCGCTGCCT GGGCCAAGGC GCATCCGGAG CGTATCAGCG AGTTGCTGGC CAGTAACCCC
AGCTACGTGT TTTTCGGCCG TAACCCGGAC AGCAACGAAG GCCCGCGTGG CTCGCTCAAC
GTGCCACTGA CGCCGGGTTA CAGCGTAGCC ATCGACCGCA AGGTGATTCC GCTGGGCAGC
CTGCTCTGGT TGTCTACCAC GCGACCGGAT GGCAGCAGCG TGGTGCGCCC GGTTGCTGCG
CAGGACACTG GCGGTGCGAT TGCGGGTGAA GTCCGCGCTG ATCTGTTCTG GGGCACTGGC
GATGAGGCCG GGAAGCTGGC AGGTGACATG AAACAGAAAG GCAATATCTG GTTGCTGTGG
CCCAAGGGCA TGGCATTGCC GCAGACTGTC GATGCAGAAC CTGCGCCCGC CAGCCACTGA
|
|---|
| Protein sequence | MLLMMFSLKP WSRGLALALP LAVLLAACDK SDKPVTPPAA PHTTYTQASW EALPAVSDAD
LQAGFAAWRS ACVRLKADAV WGPTCAAAAS VAAAPDATQI RTFLQGQLQV YSLRADGGSA
DGLITGYYEP VYPGSLTRTE TANVPVYGIP DDLIVVNLDS IYPELKGKRL RGRLEGRVLK
PYDDAATINA QGLNAPVIAW LTDPMDVQFL QIQGSGRVSL EDGSQLRLGY ADQNGRPYRA
IGRWLVEQGE LKKEDVTMGS IAAWAKAHPE RISELLASNP SYVFFGRNPD SNEGPRGSLN
VPLTPGYSVA IDRKVIPLGS LLWLSTTRPD GSSVVRPVAA QDTGGAIAGE VRADLFWGTG
DEAGKLAGDM KQKGNIWLLW PKGMALPQTV DAEPAPASH
|
|---|
| |