| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0965 |
|---|
| Symbol | |
|---|
| ID | 1182594 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 1048609 |
|---|
| End bp | 1051557 |
|---|
| Gene Length | 2949 bp |
|---|
| Protein Length | 982 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637392342 |
|---|
| Product | sensor histidine kinase |
|---|
| Protein accession | NP_790804 |
|---|
| Protein GI | 28868185 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0591] Na+/proline symporter
[COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTTTA GCCTGACGCA GATGCTGCTG GTCAGCGCCG CTTATCTGCT GGTGCTGTTC
GGTGTGGCCT GGATCAGCGA GCGCGGGCTG ATTCCGCGCT GGATCATTCG CCACCCTCTG
ACCTACACCC TGTCGCTCGG TGTATACGCC AGCGCTTGGG CGTTCTACGG CACGGTCGGT
CTGGCCTACC AGTATGGCTA CGGCTTTCTG TCCAGCTACC TCGGGGTTTC CGGGGCGTTT
CTGCTCGCGC CAGTGCTGCT ATACCCGATC CTGAAAATTA CCCGCACCTA TCAGTTATCA
TCGCTGGCCG ACCTGTTCGC CTTCCGCTTT CGCAGCACCT GGGCCGGCGC GCTGACCACG
GTGTTCATGC TGATCGGCGT GCTGCCGTTG CTGGCCTTGC AGATTCAGGC CGTGGCCGAC
TCCATCGGCA TCCTGACCCG CGAACCCGTG CAAGACCGCG TCGCCGTGGC ATTTTGCGCG
TTGATCACCC TGTTCACGAT CTTCTTTGGC TCGCGACACA TCGCAACCCG TGAGAAGCAC
GAAGGCCTGG TGTTCGCCAT CGCCTTTGAA TCGCTGATCA AGCTGATCGC CATGGGCGGC
GTCGGGCTGT ATGCCTTGTA TGGCGTGTTC GACGGCCCGC AACAGCTCGA GCTGTGGCTG
TTGCAGAATC AGACCGCCCT CGCCTCGCTG CACACACCGT TGCAGGAAGG CCCGTGGCGC
ACGCTGCTGC TGGTGTTCTT CGCCTCAGCC ATCGTCATGC CGCACATGTA CCACATGACC
TTCACGGAAA ACCTCAACCC GCGCTCGCTG GTCAGTGCCA GCTGGGGGTT GCCGCTGTTT
CTGCTGTTGA TCAGCCTGGC CGTGCCGCTG ATTCTGTGGG CCGGGCTCAA GCTGGGTGCC
ACCACCAGCC CGGAATATTT CACCCTCGGA ATCGGTATCG CCGCCAACAG CAAGTCGCTG
GCCTTGCTGG CCTATGTCGG CGGGCTTTCG GCCGCCAGCG GGCTGATTAT CGTCACCACC
CTGGCGTTGT CGGGCATGGC GCTCAACCAC CTGGTGCTGC CGCTTTATCA GCCACCGGCT
GAAGGCAATA TCTATCGCTG GCTGAAGTGG ACCCGACGCG GCCTGATCGT AGCGATTATC
GCGTTGGGTT ACGGCTTCTA CCTGATGCTG GGCGCACAAC AGGATCTGGC CAATCTGGGC
ATCGTGGCTT TCGTGGCAAC CCTGCAGTTC CTGCCCGGCG TGCTGTCGGT GCTGTACTGG
CCGACCGCCA ACCGGCGTGG CTTCATCGCC GGCCTGCTGG CCGGGATCAG CGTCTGGGCG
GTCAGCATGT TGCTGCCGCT GATCGGCAAC CTGCAGGGCT TCTATATTCC CTGGCTGAAC
ATGATCTACG TGCTGGACGA CACCAGTTGG CACATGGCAG CTATCGCGTC GCTCGCAGCC
AACGTGCTGC TGTTTACCCT GATCTCGCTG TTCACCAACG CCAGCCCCGA AGAAGTCAGC
GCCGCCGAGG CCTGCGCCGT CGACAACATG CGTCGCCCGC AGCGCCGCGA GCTGCATGCC
GTTTCGCCTC AGGAGTTCGC CACCCAACTG GCCAAGCCGT TGGGCGCGAA AGCCGCACAA
AAAGAGGTCG AACAGGCGCT GCGCGACCTC TACCTGCCGT TCGACGAGCG CCGCCCTTAT
GCGTTGCGCC GCCTGCGTGA CCGGATCGAA GCCAACCTGT CCGGGCTGAT GGGGCCAAGC
GTCGCCCAGG ACATGGTCGA AACCTTCCTG CCGTACAAGT CAGGCAGTGA AAAATACGTC
ACCGAAGACA TCCATTTCAT CGAAAGCCGG CTTGAGGACT ACCACTCGCG CCTGACCGGC
CTGGCCGCCG AACTCGACGC CTTGCGCCGC TACCACCGTC AGACGCTGCA AGAGCTACCG
ATGGGCGTCT GCTCGCTGGC CGAAGATCAG GAGATCCTGA TGTGGAACCG GGCCATGGAA
GAACTGACCG GAATCGTCGC CCAACGGGTG GTCGGCTCGC GCCTGGACAC CATTGCCGAA
CCCTGGAAAG GCCTGCTGAC CGGTTTCACC AGCCTTCCCG ATGAGCATTT GCACAAGCAG
AAGCTCGGGC TGGACGGGCA GACCCGCTGG CTGAACCTGC ACAAAGCGGC CATCAACGAG
CCTCTCGCGC CAGGCAACAG CGGGCTGGTC GTGCTGGTCG AAGACCTCAC CGACACTCAG
ATGCTCGAAG ACAAACTGGT GCATTCGGAA CGCCTGGCCA GCATCGGCCG CCTGGCGGCA
GGCGTGGCGC ACGAGATTGG CAACCCGATC ACCGGCATTG CCTGCCTTGC GCAGAACCTG
CGTGAAGAGC GCGAAGAAGA CGGCGAACTG AAAGAAATCA GCAGCCAGAT CCTCGAGCAG
ACCAAACGTG TGTCGCGCAT CGTTCAGTCA CTAATGAGCT TCGCCCACGC AGGCGCGCAC
CAGCACAGCG ACGAAGCCGT CTGTCTGGCC GAAGTGGCCC AGGATGCCAT TGGTCTGCTG
GCCCTTAACC GGCGCAATTT CGAAGTGCAC TTCTATAACC TGTGCAACCC CGAGCATTGG
GCCGTTGGCG ATCCGCAGCG GTTGGCACAG GTGCTGATCA ATCTGCTCTC CAACGCGCGC
GATGCCTCCC CGGCAGGCAG CGCCGTGCGG GTCAGAAGCG AAGCATCCGA GCACACTGTG
GACCTCATCG TCGAAGACGA AGGCAGTGGG ATTTCAAAGG CAATCATGGA CAGATTGTTC
GAGCCGTTCT TCACCACCAA GGACCCTGGC GAGGGAACCG GACTTGGCCT TGCGCTGGTC
TATTCCATCG TTGAAGAGCA TTATGGACAA ATCACCATCG ACAGCCCGGC AGATCCCGAG
CAGCAGCGTG GTACCCGTAT TCGGGTGACC TTGCCACGCC ATGTCGACGC GACGTCCACC
GCGAACTGA
|
|---|
| Protein sequence | MSFSLTQMLL VSAAYLLVLF GVAWISERGL IPRWIIRHPL TYTLSLGVYA SAWAFYGTVG
LAYQYGYGFL SSYLGVSGAF LLAPVLLYPI LKITRTYQLS SLADLFAFRF RSTWAGALTT
VFMLIGVLPL LALQIQAVAD SIGILTREPV QDRVAVAFCA LITLFTIFFG SRHIATREKH
EGLVFAIAFE SLIKLIAMGG VGLYALYGVF DGPQQLELWL LQNQTALASL HTPLQEGPWR
TLLLVFFASA IVMPHMYHMT FTENLNPRSL VSASWGLPLF LLLISLAVPL ILWAGLKLGA
TTSPEYFTLG IGIAANSKSL ALLAYVGGLS AASGLIIVTT LALSGMALNH LVLPLYQPPA
EGNIYRWLKW TRRGLIVAII ALGYGFYLML GAQQDLANLG IVAFVATLQF LPGVLSVLYW
PTANRRGFIA GLLAGISVWA VSMLLPLIGN LQGFYIPWLN MIYVLDDTSW HMAAIASLAA
NVLLFTLISL FTNASPEEVS AAEACAVDNM RRPQRRELHA VSPQEFATQL AKPLGAKAAQ
KEVEQALRDL YLPFDERRPY ALRRLRDRIE ANLSGLMGPS VAQDMVETFL PYKSGSEKYV
TEDIHFIESR LEDYHSRLTG LAAELDALRR YHRQTLQELP MGVCSLAEDQ EILMWNRAME
ELTGIVAQRV VGSRLDTIAE PWKGLLTGFT SLPDEHLHKQ KLGLDGQTRW LNLHKAAINE
PLAPGNSGLV VLVEDLTDTQ MLEDKLVHSE RLASIGRLAA GVAHEIGNPI TGIACLAQNL
REEREEDGEL KEISSQILEQ TKRVSRIVQS LMSFAHAGAH QHSDEAVCLA EVAQDAIGLL
ALNRRNFEVH FYNLCNPEHW AVGDPQRLAQ VLINLLSNAR DASPAGSAVR VRSEASEHTV
DLIVEDEGSG ISKAIMDRLF EPFFTTKDPG EGTGLGLALV YSIVEEHYGQ ITIDSPADPE
QQRGTRIRVT LPRHVDATST AN
|
|---|
| |