Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_0963 |
Symbol | pcnB |
ID | 1182592 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 1045046 |
End bp | 1046449 |
Gene Length | 1404 bp |
Protein Length | 467 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637392340 |
Product | poly(A) polymerase |
Protein accession | NP_790802 |
Protein GI | 28868183 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0617] tRNA nucleotidyltransferase/poly(A) polymerase |
TIGRFAM ID | [TIGR01942] poly(A) polymerase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCTGAAGA AGTTGTTCCA GTCATTTCGT TCCCCACTGC GCAAACCGCA GCAACACACG CGCACCACGC CTGAAGTGCT CAATAGCAGC CAGCATTCGC TGCAACGCAG CCAGTTCAGC CGTTATGCCG TCAATATTGT CGAGCGTCTG CAAAATGCAG GCTATCAGGC CTATCTGGTC GGTGGCTGCG TACGCGACAT GATGCTCAAT ATCACGCCCA AGGATTTTGA CGTCGCCACC AGTGCCACGC CTGAACAAGT GCGTGCCGAG TTCCGCAATG CGCGGATCAT TGGCCGCCGG TTCAAGCTGG TGCACATCCA CTTCGGTCGT GAAATCATCG AAGTGGCGAC GTTCCGCGCC AATCATCCAC AGGATGATGA AGAAGAGGAC AGCAACCAGT CCTCGCGCAA TGAAAGCGGA CGCATCCTGC GTGACAACGT TTACGGCACG CTTGAAGAAG ACGCTCAGCG TCGCGACTTC ACGATCAATG CGCTGTATTA CGACCCGGTC AGCGAGCGTG TTCTGGATTA CGCCAACGGC GTGCATGACA TCCGCAATCG TCTGATCCGC CTGATCGGCG ACCCCGAGCA GCGTTACAAG GAAGACCCGG TGCGCATGCT GCGTGCCGTG CGCTTCGCGG CCAAACTGGA TTTCGGCATC GAGAAGCACA GCGCTCAGCC GATCCGCGCA CTGGCACCGA TGCTGCGCGA TATTCCTTCG GCGCGCCTGT TCGAAGAGGT GCTCAAGCTG TTCCTCTCCG GCTACGCCGC GCCGACGTTC GAGATGCTGG TTGACCTGGA GCTGTTCGAG CCCCTGTTCC CGGCCAGTTC AAAAGCGCTG GAATACAACC CGACCTACAC CCACACGCTG ATCAGCAATG CGCTGATCAA CACTGACCTG CGCATCAAGC AGAACAAACC GGTCACCCCG GCGTTCCTGT TTGCCGCCCT GCTCTGGCCT GCGCTGCCAG CCAAGGTGCT GCGTGCCCAG GAACGTGGCA TGCCGCCGAT TGCAGCCATG CAGGACGCCG CTCACGAGCT GATCATCGAG CAGTGCCAGC GCATCGCGAT TCCCAAGCGC TTTACCCTGC CGATCCGCGA AATCTGGGAC ATGCAGGAGC GCCTGCCGCG TCGTTCGGGC AAACGTGCCG ACCTGTTGCT GGACAACTCG CGCTTCCGTG CCGGCTACGA CTTCCTGCTG CTACGCGAAA GCGCGGGCGA GCAGACTGAC GGTCTGGGCC AATGGTGGAC CGATTATCAG GACTGCAACG ACAGCGAACG TCGCGACATG ATTCGTGACC TGAGCAACAA GCCAGAAGCC GCCGGCGCTG CTCCGCGCAA GCGTCGTCGC AACAGTGGCG CCAAACGCAA GCGCAGCAGT GGCGAGGCGC AAAGCGGTGA GTAA
|
Protein sequence | MLKKLFQSFR SPLRKPQQHT RTTPEVLNSS QHSLQRSQFS RYAVNIVERL QNAGYQAYLV GGCVRDMMLN ITPKDFDVAT SATPEQVRAE FRNARIIGRR FKLVHIHFGR EIIEVATFRA NHPQDDEEED SNQSSRNESG RILRDNVYGT LEEDAQRRDF TINALYYDPV SERVLDYANG VHDIRNRLIR LIGDPEQRYK EDPVRMLRAV RFAAKLDFGI EKHSAQPIRA LAPMLRDIPS ARLFEEVLKL FLSGYAAPTF EMLVDLELFE PLFPASSKAL EYNPTYTHTL ISNALINTDL RIKQNKPVTP AFLFAALLWP ALPAKVLRAQ ERGMPPIAAM QDAAHELIIE QCQRIAIPKR FTLPIREIWD MQERLPRRSG KRADLLLDNS RFRAGYDFLL LRESAGEQTD GLGQWWTDYQ DCNDSERRDM IRDLSNKPEA AGAAPRKRRR NSGAKRKRSS GEAQSGE
|
| |