Gene PSPTO_0852 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_0852 
SymbolhopAJ1 
ID1182481 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp920451 
End bp921692 
Gene Length1242 bp 
Protein Length413 aa 
Translation table11 
GC content56% 
IMG OID637392229 
Producttype III helper protein HopAJ1 
Protein accessionNP_790692 
Protein GI28868073 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2951] Membrane-bound lytic murein transglycosylase B 
TIGRFAM ID[TIGR02283] lytic murein transglycosylase 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGTTCCA GGGTTATAAC TACATCGCTG GTAGTCATTA TGCTCTCATG TGCATCAGCC 
GCTCCAGCTT GCTTCTCCGC AGACATGACT CCCAGCGTGT CGAACGAGAG CACGTCGGAG
GCGGATTTTC AGCAATGGCT GGCTACTTTC CGCAGCAATG CAACTACTAA GGGCATCGAC
ACAGCCACAC TCGATCTTGC TTTCCAAAAC ATCACGCTTG ACCCGACTGT GCACCAGTTG
GATATGGCGC AACCAGAGTT CACGACGGCC ATCTGGGATT ATTTGTCTGA ACGTCTGACT
CCGAAGAATA TCCAGCAAGG GCAGGAGCTT CTGCAAAAAG AGCCAGTTCT GAACGAGGTA
GAGCGTCACT ACGGTGTGGA TGCGAAGATT ATCGCGGCCA TCTGGTGTAT TGAAAGCGGC
TACGGTAAGG ATATTGGTAG TCGCGATGTG ATTCGTTCCT TGGCCACGCT TGCTTACAAG
GGCCGGCGGA TGGATTACGG GGCTACACAG TTGATGGCCG CCCTTCATAT CGTGCAAAAC
AAAGACATCG CCCGTGCGCA ATTGATTGGC TCGTGGGCTG GCGCGATGGG GCAGACGCAA
TTCATCCCGA CGACCTATCT CGACTATGCA GTTGATTTTA ACCACGACAA TCGGCGCGAC
GTTTGGAGTT CCCGGGCCGA TGCGCTGGCC TCCACTGCCT CTTATTTACA ACGCAGCGCT
TGGAACTCGC GCGTCTCTTG GGGACAGGAG GTGCAGTTGC CCGAGAATTT CGATTACGCT
CAGGCTGACA TGTCGATCAA GAAGCCCGTT GCCGAATGGC AACGGCTCGG GGTGATGGGA
ACGAAGCAAG CGATTCCGGG CGAGCTCGCA CAGGAGCAAG CATCGGTCCT GCTGCCCGCA
GGTTATCGCG GGCCAGCATT TATGGTCCTA AGTAATTTCC GTAGCATCCT GCGCTATAAC
AACTCCACTG CCTATGCGCT AACGATCGGG CTACTAGCCG ACAGTTATGC TGGCGGGACC
GGCGTGTCTC ACCCGTGGCC AACTGATAAT CCTCCCTTGG GCAGCATTGC GCAGGTAACC
GATTTGCAGA AACTGCTGAC TGCTAAGGGC TACTCCCTGG GTGCTGCTGA CGGTGTTATA
GGGGCGATGA CCCGGGCGGC CATCCGGGCT TACCAGAAGG ATCAGCATTT GCCACCCGAC
GGTTACGCCA GCACTGTACT ACTGGAGAGC CTGCGCCGAT AG
 
Protein sequence
MRSRVITTSL VVIMLSCASA APACFSADMT PSVSNESTSE ADFQQWLATF RSNATTKGID 
TATLDLAFQN ITLDPTVHQL DMAQPEFTTA IWDYLSERLT PKNIQQGQEL LQKEPVLNEV
ERHYGVDAKI IAAIWCIESG YGKDIGSRDV IRSLATLAYK GRRMDYGATQ LMAALHIVQN
KDIARAQLIG SWAGAMGQTQ FIPTTYLDYA VDFNHDNRRD VWSSRADALA STASYLQRSA
WNSRVSWGQE VQLPENFDYA QADMSIKKPV AEWQRLGVMG TKQAIPGELA QEQASVLLPA
GYRGPAFMVL SNFRSILRYN NSTAYALTIG LLADSYAGGT GVSHPWPTDN PPLGSIAQVT
DLQKLLTAKG YSLGAADGVI GAMTRAAIRA YQKDQHLPPD GYASTVLLES LRR