Gene PSPTO_0679 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_0679 
Symbol 
ID1182299 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp736029 
End bp736715 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content60% 
IMG OID637392054 
Productouter membrane protein OmpW 
Protein accessionNP_790526 
Protein GI28867907 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3047] Outer membrane protein W 
TIGRFAM ID[TIGR03304] outer membrane insertion C-terminal signal 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACAAGC ATCTGCTACG CGCATCTCTT GCCGCGCTTG CCCTCACAGC CCCGCTCGCG 
GCGAACGCCT ACGAGAAAGG CGACTTCATC GTTCGCGCCG GTGCCGCCCA CGTCCAGCCC
AACGAAGACA GCGGTGAAGT CCGCCTGGAC GGTGCCAAGG TTTCCGGCAC CAAATCGACG
CTGGATGGCG ATACTCAGCT GGGCCTGACC TTCGCTTACA TGCTCACCAA CCATATCGGC
ATCGAGCTGC TGGCTGCCAC GCCGTTCAAC CACACCGTAT CCGTCAAGGG CCTGGGCCCC
GGGCTTGACG GCAAGCTGGC CGATGTCAAA CATCTGCCGC CAACCCTGTC GCTGCAATAC
TACCCGATGG AGCCTTCGTC CAGATTCCAG CCGTATGCGG GCGTGGGCAT CAACTACACC
ACCTTCTTCG ACAATGACCT GACCAGCGAT CGCAAGAGTC AAGGTTTCAG CAACCTCAAA
CTCAAGGACT CGGTCGGCCT GGCCGCCCAG TTGGGCATGG ACTACATGAT CACCGACAAC
GTACTGGTCA ACGCCTCGGT CTGGTACGTG GATATCAACA CCGAAGCGAC AGTGGACGGC
CCTTCTGCTT TGGCAGTCGG CCAGACCAAG GTCGATGTTG ACATCGACCC GTGGGTGTAC
ATGGTCGGTG TGGGTTACAA GTTCTGA
 
Protein sequence
MNKHLLRASL AALALTAPLA ANAYEKGDFI VRAGAAHVQP NEDSGEVRLD GAKVSGTKST 
LDGDTQLGLT FAYMLTNHIG IELLAATPFN HTVSVKGLGP GLDGKLADVK HLPPTLSLQY
YPMEPSSRFQ PYAGVGINYT TFFDNDLTSD RKSQGFSNLK LKDSVGLAAQ LGMDYMITDN
VLVNASVWYV DINTEATVDG PSALAVGQTK VDVDIDPWVY MVGVGYKF