Gene PSPTO_0643 details

Gene Information

• Locus tag: PSPTO_0643
• Symbol: rpsE
• ID: 1182263
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 699608
• End bp: 700108
• Gene Length: 501 bp
• Protein Length: 166 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 637392018
• Product: ribosomal protein S5
• Protein accession: NP_790490
• Protein GI: 28867871
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0098] Ribosomal protein S5
• TIGRFAM ID: [TIGR01021] ribosomal protein S5, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.00626233
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCAAATC ACGACCAAAA ACGCGACGAA GGCTACATCG AAAAACTGGT TCAAGTTAAC 
CGCGTTGCCA AAACCGTAAA AGGCGGCCGT ATCTTCACTT TCACTGCGTT GACCGTGGTG 
GGTGATGGTA AAGGGCGCGT TGGCTTCGGC CGTGGCAAGT CACGTGAAGT GCCTGCTGCA 
ATCCAGAAAG CGATGGAAGC TGCTCGCCGC AACATGATTC AGGTTGACCT GAACGGCACT 
ACATTGCAGT ACGCAATGAA GTCTGCTCAT GGCGCCTCGA AGGTGTACAT GCAGCCTGCT 
TCTGAAGGTA CCGGTATCAT CGCTGGCGGC GCAATGCGCG CAGTGCTGGA AGTTGCTGGT 
GTTCAGAACG TATTGGCCAA GTGCTACGGT TCGACTAACC CTGTAAACGT GGTTCACGCC 
ACTTTCAAGG GTTTGAAAGG CATGCAGTCT CCTGAGTCGA TCGCTGCCAA GCGTGGCAAG 
CGTGTTGAGG AGATCATCTG A 

 

Protein sequence

MSNHDQKRDE GYIEKLVQVN RVAKTVKGGR IFTFTALTVV GDGKGRVGFG RGKSREVPAA 
IQKAMEAARR NMIQVDLNGT TLQYAMKSAH GASKVYMQPA SEGTGIIAGG AMRAVLEVAG 
VQNVLAKCYG STNPVNVVHA TFKGLKGMQS PESIAAKRGK RVEEII