Gene PSPTO_0641 details

Gene Information

• Locus tag: PSPTO_0641
• Symbol: rplF
• ID: 1182261
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 698710
• End bp: 699243
• Gene Length: 534 bp
• Protein Length: 177 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 637392016
• Product: ribosomal protein L6
• Protein accession: NP_790488
• Protein GI: 28867869
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0097] Ribosomal protein L6P/L9E
• TIGRFAM ID: [TIGR03654] ribosomal protein L6, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 0.000196267
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCACGCG TAGCTAAGAA CCCCGTTAAG CTGCCATCAG GCGTCGAAGT CAAACTCGTC 
GGCCAGCAGC TTTCGGTGAA GGGTGCCAAG GGCACTCTAG AACTGATTAT CCATTCGTCT 
GTTGAGATTG TTGAAGAAGC TGGTGAGCTG CGTTTCGCTG CTCGCAATGG CGATCAACAA 
ACCCGCGCAA TGGCAGGCAC CACTCGTGCA CTGGTTAACA ACATGGTCCA GGGCGTAAGC 
CAAGGCTTTG AGCGCAAGCT CCAGCTGGTC GGTGTTGGTT ACAAGGCGCA AGCAAAAGGC 
ACGGTCCTGA ACCTTGCACT TGGCTTTTCG CACCCGGTGG ACTATGAATT GCCGAATGGC 
ATCACCGCTG AGACCCCCAG CCAGACCGAT ATCCTGATTC GCGGTATCGA TAAGCAGTTG 
GTTGGTCAAG TGGCCGCTGA GATCCGCGAC TTCCGCCGTC CTGAGCCTTA CAAAGGCAAA 
GGTGTGCGTT ACGCGGACGA AGTCGTCCGC CGTAAAGAAG CCAAGAAGAA GTAG 

 

Protein sequence

MSRVAKNPVK LPSGVEVKLV GQQLSVKGAK GTLELIIHSS VEIVEEAGEL RFAARNGDQQ 
TRAMAGTTRA LVNNMVQGVS QGFERKLQLV GVGYKAQAKG TVLNLALGFS HPVDYELPNG 
ITAETPSQTD ILIRGIDKQL VGQVAAEIRD FRRPEPYKGK GVRYADEVVR RKEAKKK