Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_0629 |
Symbol | rplB |
ID | 1182249 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 693445 |
End bp | 694269 |
Gene Length | 825 bp |
Protein Length | 274 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 637392004 |
Product | ribosomal protein L2 |
Protein accession | NP_790476 |
Protein GI | 28867857 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0090] Ribosomal protein L2 |
TIGRFAM ID | [TIGR01171] ribosomal protein L2, bacterial/organellar |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.000177607 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCAATCG TTAAATGCAA ACCGACTTCC CCTGGCCGCC GTTTTGTGGT CAAGGTGGTC AACCAGGAGC TGCATAAAGG CGCTCCTCAC GCACCGCTGC TCGAGAAAAA ATCGAAGACT GGTGGTCGTA ACAACAATGG TCGTATTACT ACCCGTCATA TCGGTGGTGG CCATAAGCAG CATTATCGTC TGGTCGATTT CCGTCGCAAC GACAAGGATG GCATTACTGC CACCGTCGAG CGTATTGAAT ACGATCCAAA CCGTACTGCT CACATTGCTC TGCTGCTTTA CGCAGACGGC GAGCGCCGCT ACATCATCGC CCCTAAAGGC GTGAGTGCTG GCGACCAGCT GATTGCAGGT GCTTTGGCAC CAATCAAGCC GGGCAACGCT CTTCAACTGC GTAATATTCC AGTTGGTAGC ACCGTGCACG GCATCGAACT GAAGCCAGGT AAAGGCGCAC AGATCGCTCG TTCTGCTGGT GCTTCTGCAC AGCTGATCGC TCGTGAAGGT GTGTACGTGA CCCTGCGTCT TCGCTCCGGT GAAATGCGTA AAGTACTGTC TGAATGCCGT GCAACGCTGG GCGAAGTCTC GAACTCCGAG CACAGCCTTC GTTCGCTGGG TAAAGCTGGT GCCAAACGCT GGCGTGGCGT TCGCCCAACC GTTCGTGGTG TTGCCATGAA CCCGGTTGAC CACCCACATG GTGGTGGTGA AGGTCGTACC TCTGGTGGTC GTCATCCGGT ATCGCCGTGG GGCTTCCCGA CTAAGGGCGC GAAGACTCGT GGTAATAAGC GTACCGACAA AATGATCGTC CGTCGTCGCA AGTAA
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Protein sequence | MAIVKCKPTS PGRRFVVKVV NQELHKGAPH APLLEKKSKT GGRNNNGRIT TRHIGGGHKQ HYRLVDFRRN DKDGITATVE RIEYDPNRTA HIALLLYADG ERRYIIAPKG VSAGDQLIAG ALAPIKPGNA LQLRNIPVGS TVHGIELKPG KGAQIARSAG ASAQLIAREG VYVTLRLRSG EMRKVLSECR ATLGEVSNSE HSLRSLGKAG AKRWRGVRPT VRGVAMNPVD HPHGGGEGRT SGGRHPVSPW GFPTKGAKTR GNKRTDKMIV RRRK
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