Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_0571 |
Symbol | |
ID | 1182182 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 628136 |
End bp | 628783 |
Gene Length | 648 bp |
Protein Length | 215 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637391938 |
Product | repressor protein c2 |
Protein accession | NP_790418 |
Protein GI | 28867799 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG1974] SOS-response transcriptional repressors (RecA-mediated autopeptidases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.72773 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACAGAA AATGGTATGA AGTCGCAAGA CAGGTCATGG AAACCCAGGA AATCAGCCAG GAAGAAATGG CTGAGCGCAT GGGCGTTACC CCCGGCGCGG TGGGGCATTG GCTCAACGGC AAACGCGAAC CGAAGATCGA GGTCATCAAT CGATTGCTGG GTGAGCTGGG CCTGCCGATC CTCGCGACCT CGATCCCGTC GAGCGAGCCG GGCATGCAAA ACGTGGCGCC TACGGTGCAG CCTTCGCGTT TCTATCGGTA CCCGGTTATC AGTTGGGTCG AGGCCGGCGG CTGGAGCGAG GCGGTCGAGC CCTACCCTGC GGGTTATTCC GACACCTTCG AGATCAGCGA CTATAAAGCC AAGGGCCGCG CCTTCTGGCT GGTGGTGCGT GGCGACTCGA TGACTGCGCC CGCAGGCCAG AGCATTCCTG AAGGCATGCT GATCCTGGTG GACACCGGAA TCGAGCCCAC GGCCGGCAAG CTGGTGATCG CCAAGCTGCC GGAAAGCAAC GAGGCCACCT TCAAAAAACT GGTCGAAGAT GCCGGACGCT ATTTTCTCAA GCCGTTGAAC CCCGCCTATC CGACCCTCCC GGTCACCGAA GACTGCAAGC TGATCGGGGT CATCAGGCAA ATGACGATGC GCTTGTGA
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Protein sequence | MNRKWYEVAR QVMETQEISQ EEMAERMGVT PGAVGHWLNG KREPKIEVIN RLLGELGLPI LATSIPSSEP GMQNVAPTVQ PSRFYRYPVI SWVEAGGWSE AVEPYPAGYS DTFEISDYKA KGRAFWLVVR GDSMTAPAGQ SIPEGMLILV DTGIEPTAGK LVIAKLPESN EATFKKLVED AGRYFLKPLN PAYPTLPVTE DCKLIGVIRQ MTMRL
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