Gene PSPTO_0560 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_0560 
Symbol 
ID1182170 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp616355 
End bp616984 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content60% 
IMG OID637391927 
ProductDNA-binding response regulator, LuxR family 
Protein accessionNP_790407 
Protein GI28867788 
COG category[T] Signal transduction mechanisms
[K] Transcription 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGATTCGTG TTTTGGTAGC CGAAGACCAC ACCATCGTGC GTGAAGGGAT CAAGCAGTTG 
ATTGGTCTGG CCAGAGACCT GCAAGTGGTC GGTGAGGCCA GCAACGGCGA GCAGTTGCTC
GAGACCCTGC GCCATGTGGC CTGCGAAGTG GTGTTGCTGG ATATTTCCAT GCCCGGCGTG
AATGGCCTTG AGGCGATTCC GCGGATTCGC GCACTGACCC ATCCGCCTGC GATTCTTGTG
TTGTCGATGC ACAACGAGGC GCAGATGGCT GCACGCGCCT TGAAGGTCGG CGCGGCGGGC
TATGCGACAA AAGATAGCGA CCCGGCATTG CTGCTGACGG CGATTCGTCG GGTTGCGGCG
GGCGGGCGTT ACATCGACCC GGACCTGGCC GACCGCATGG TCTTTGAAGT AGGTCTCACC
GATAGCCGGC CGTTGCACTC ATTGCTGTCT GAGCGCGAGT TCTCGGTGTT CGAGCGCCTG
GCGCAGGGCG CCAACGTCAA TGACATTGCC CAGCAACTGG CCCTGAGCAG CAAGACCATC
AGCACCCACA AAGCGCGGCT GATGCAGAAA ATGAAACTCA ACTCACTGGC CGATCTCGTC
AAATACGCGA TGGAGCACAA ACTGCTCTGA
 
Protein sequence
MIRVLVAEDH TIVREGIKQL IGLARDLQVV GEASNGEQLL ETLRHVACEV VLLDISMPGV 
NGLEAIPRIR ALTHPPAILV LSMHNEAQMA ARALKVGAAG YATKDSDPAL LLTAIRRVAA
GGRYIDPDLA DRMVFEVGLT DSRPLHSLLS EREFSVFERL AQGANVNDIA QQLALSSKTI
STHKARLMQK MKLNSLADLV KYAMEHKLL