Gene PSPTO_0537 details

Gene Information

• Locus tag: PSPTO_0537
• Symbol: rpoD
• ID: 1182147
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: -
• Start bp: 588846
• End bp: 590696
• Gene Length: 1851 bp
• Protein Length: 616 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 637391904
• Product: RNA polymerase sigma-70 factor
• Protein accession: NP_790384
• Protein GI: 28867765
• COG category: [K] Transcription
• COG ID: [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
• TIGRFAM ID: [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain; [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCGGAA AAGCGCAACA GCAGTCTCGT ATCAAAGAGT TGATCACCCT GGGTCGTGAG 
CAGAAGTATC TGACTTACGC AGAGGTCAAC GACCACCTGC CTGAGGATAT TTCAGATCCC 
GAGCAGGTGG AAGACATCAT CCGCATGATC AACGACATGG GGATCCCGGT ACACGAGAGT 
GCTCCGGATG CGGACGCCTT GATGCTGGCC GACGCCGATA CCGACGAGGC AGCCGCAGAA 
GAAGCGGCTG CAGCGTTGGC AGCGGTCGAG ACCGATATCG GGCGTACCAC CGATCCCGTT 
CGTATGTACA TGCGTGAAAT GGGCACCGTT GAACTTCTGA CCCGTGAAGG CGAAATCGAA 
ATCGCCAAAC GTATCGAAGA AGGCATCCGT GAAGTGATGG GCGCAATTGC GCACTTCCCA 
GGCACGGTTG ACCATATTCT CTCCGAATAC ACACGTGTCA CCAGCGAAGG CGGTCGTCTC 
TCCGACGTTC TCAGCGGTTA TATCGACCCG GACGACGGCA TCGCGCCGCC TGCCGAAGTC 
CCTCCGCCCG TCGACCCCAA AGCCGTCAAG GCCGAAGGCG CTGACGATGA TGAGGAAGAG 
TCGGCAGACT CGAGCGACGA AGAAGACGAA GTCGAAAGCG GTCCGGATCC GGTCATCGCC 
CAGCAGCGTT TCGGTGCGGT TTCCGATCAA ATGGAAATCA CCCGCAAGGC GCTGAAGAAG 
TTCGGTCGCG ACGACAAGCA CGCCATCGCC GAACTGGTTG CCCTTGCCGA ATTGTTCATG 
CCGATCAAAC TGGTTCCAAA ACAGTTTGAA GGTCTGGTAG AGCGTGTCCG TGGTGCCCTC 
GAGCGTCTTC GTGCTCAGGA ACGCGCCATC ATGCAGTTGT GCGTACGTGA TGCACGTATG 
CCGCGCGCCG ACTTCCTGCG CCAGTTCCCC GGCCACGAAG TTGACGAAAG CTGGACCGAT 
GGGCTCGCCA AAGGTAAAGG CAAATACGCT GAAGCCATTG GTCGCCTGCA GCCTGACATC 
CAGCGTTGCC AGCAGAAGCT GTCTGCGCTG GAAGAAGAAA CCGGCCTGAA AATCGCCGAG 
ATCAAGGACA TCAACCGTCG CATGTCGATC GGTGAGGCCA AGGCCCGCCG CGCGAAGAAA 
GAGATGGTTG AAGCCAACTT GCGTCTGGTG ATCTCCATCG CCAAGAAGTA CACCAACCGT 
GGCCTGCAAT TCCTCGATCT GATCCAGGAA GGCAACATCG GCTTGATGAA GGCTGTGGAC 
AAGTTCGAAT ACCGTCGTGG CTACAAGTTC TCGACGTATG CGACCTGGTG GATCCGTCAG 
GCGATCACTC GCTCGATTGC CGACCAGGCC CGCACCATTC GTATTCCGGT GCACATGATC 
GAGACGATCA ACAAGCTCAA CCGTATTTCC CGGCAGATGC TGCAGGAAAT GGGTCGCGAA 
CCGACCCCGG AAGAGCTGGG CGAACGCATG GAAATGCCTG AGGATAAAAT CCGCAAGGTA 
TTGAAGATCG CCAAAGAGCC GATCTCCATG GAAACCCCGA TCGGTGACGA CGAAGATTCG 
CACCTGGGTG ACTTCATCGA AGACTCGACC ATGCAGTCGC CAATCGATGT CGCCACCGTT 
GAAAGCCTGA AAGAAGCGAC ACGCGAAGTG CTATCGGGCC TTACCGCCCG TGAAGCCAAG 
GTTCTGCGCA TGCGTTTCGG CATCGACATG AATACCGACC ACACGCTTGA AGAAGTCGGT 
AAACAGTTTG ACGTAACCCG CGAGCGGATT CGTCAGATCG AAGCCAAGGC ACTGCGCAAG 
CTGCGTCACC CGACAAGAAG CGAGCACTTG CGCTCGTTCC TCGACGAGTA A 

 

Protein sequence

MSGKAQQQSR IKELITLGRE QKYLTYAEVN DHLPEDISDP EQVEDIIRMI NDMGIPVHES 
APDADALMLA DADTDEAAAE EAAAALAAVE TDIGRTTDPV RMYMREMGTV ELLTREGEIE 
IAKRIEEGIR EVMGAIAHFP GTVDHILSEY TRVTSEGGRL SDVLSGYIDP DDGIAPPAEV 
PPPVDPKAVK AEGADDDEEE SADSSDEEDE VESGPDPVIA QQRFGAVSDQ MEITRKALKK 
FGRDDKHAIA ELVALAELFM PIKLVPKQFE GLVERVRGAL ERLRAQERAI MQLCVRDARM 
PRADFLRQFP GHEVDESWTD GLAKGKGKYA EAIGRLQPDI QRCQQKLSAL EEETGLKIAE 
IKDINRRMSI GEAKARRAKK EMVEANLRLV ISIAKKYTNR GLQFLDLIQE GNIGLMKAVD 
KFEYRRGYKF STYATWWIRQ AITRSIADQA RTIRIPVHMI ETINKLNRIS RQMLQEMGRE 
PTPEELGERM EMPEDKIRKV LKIAKEPISM ETPIGDDEDS HLGDFIEDST MQSPIDVATV 
ESLKEATREV LSGLTAREAK VLRMRFGIDM NTDHTLEEVG KQFDVTRERI RQIEAKALRK 
LRHPTRSEHL RSFLDE