Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_0450 |
Symbol | |
ID | 1182059 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 493574 |
End bp | 494353 |
Gene Length | 780 bp |
Protein Length | 259 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 637391818 |
Product | ISPsy8, transposase OrfB |
Protein accession | NP_790299 |
Protein GI | 28867680 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2801] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGGCGCGCA GTACGTTCTA CTATCAGGTT CAGGTGCAAT CCAGACCCGA TCCAGATGCT GCTCTAAAGC AGGAGGTAGA GCGGATTTAT CACGAGGAGA GAGGTCTTTA TGGGGCTCGG CGCATCACAG CGGTTATCCG CAACTCAGGC ACGCTGGTCA ACAAGAAGGT TGTGGAGAGA TTGATGGCTG AACTGGGTCT GCGCTCCGTT GTTCGACCAA AAAAATACCG TTCCTATAAG GGCACCGTCG GAAAAATTGC ACCGAATTTG CTGGAGCGCA ATTTCACGGC GCAACGCCCG AACCAGAAAT GGGTGACCGA TGTGACCGAG TTTAAAGTGG CCAATCGAAA GCTGTATCTC TCGCCTGTGA TGGACCTGTA CAACGGTGAG ATCGTGGCGT ACGAATTGTC TACCAGGCCG TGCTTTGAGC TGGTCACCAG TATGCTGGAC AAGGCGTTGC AGCAGTTGCA AGACGAGCCG AAGCTTGTGA TGCACTCGGA TCAAGGCTGG CAGTATCAAC ACGCGCAGTA CCGTCAGAAA CTGGCGGCAA AGGGTGTGAA GCAAAGCATG TCTCGTAAGG GAAATTGCCT GGACAACGCT GCGATGGAAA GCTTTTTTGG TACGCTTAAG TCCGAGTTTT TCTACTTGAA ACGATTTGAA AGCATAGAAG AGCTGACGGC AGGTCTGGAG GAGTACATCC GCTACTACAA CCATGACCGC ATTAAGCTGA AGCTAGGCGG CCTGAGCCCC GTAAAATACA GGACTCAGGC GGCAAGCTAA
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Protein sequence | MARSTFYYQV QVQSRPDPDA ALKQEVERIY HEERGLYGAR RITAVIRNSG TLVNKKVVER LMAELGLRSV VRPKKYRSYK GTVGKIAPNL LERNFTAQRP NQKWVTDVTE FKVANRKLYL SPVMDLYNGE IVAYELSTRP CFELVTSMLD KALQQLQDEP KLVMHSDQGW QYQHAQYRQK LAAKGVKQSM SRKGNCLDNA AMESFFGTLK SEFFYLKRFE SIEELTAGLE EYIRYYNHDR IKLKLGGLSP VKYRTQAAS
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