| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0382 |
|---|
| Symbol | |
|---|
| ID | 1181991 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 421625 |
|---|
| End bp | 423310 |
|---|
| Gene Length | 1686 bp |
|---|
| Protein Length | 561 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637391750 |
|---|
| Product | DNA ligase, NAD-dependent, putative |
|---|
| Protein accession | NP_790231 |
|---|
| Protein GI | 28867612 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTGCCTG CCTTACGCCT GATGACCTGC GCCCTCCTGA CTTTTTTCAC AACGCTCAGC
CATGCCAGCC AGTGCCCCGA CTGGTCTCAC GCCAGGGCGA GCAGCGAAAT CACAGCCCTG
CAACAGCAAA TAGCCAGCTG GGACGACAGT TACCACCGGC AAGGCCTCTC GCAAATCCCG
GACGAGCTTT ATGACCAATC CCGGCAAAAG CTGAACGACT GGCGTTCGTG CTTTGCAGTG
TCTACACCTC AGGCCAATCC GCTGAAAACC GCCACTGGCC CGCTGGCACA CCCCGTCCCG
CACACAGGTG TGAACAAACT CGCGGACGAG AAAGACGTCA AGGCCTGGCT CAAGGGCAGA
ACCGATCTGT GGATTCAGCC CAAGGTCGAT GGCGTGGCGG TCACGCTGGT CTACGACGAG
GGCAGGCTCG TGCAGGCGAT CAGTCGCGGT GACGGGACAC AAGGCCAGGA CTGGACCCCA
CAGGCACGGC TGATCAAGGC GATCCCTCAA CAGTTACCCC AGCCCGACTC GCTGATCCTG
CAGGGCGAAC TGTATTGGCG ACTGACCGAC CACGTACAGG CGGCGTCCGG CAGCGTCAAT
GCTCGCAGCA AGGTGGCAGG CATGCTGGCC CGGCAGACCA TCAGCCCGCA ACAGGCCGAC
GCCATCGGCT TGTTCGTCTG GGACTGGCCA GACGGGCCTG CCGATATGGC TCAGCGACTC
GCCGGCCTGC AAGCCATGGG TTTTAACCAC AGTGTTGCGT ACACGCACCC GCTGGAAAAC
CACGCTCAGG CAGCAGATTG GCGCGAGCAT TGGTATCGCA ACCCTCTGCC GTTCGCCACA
GACGGCGTGA TCATGCGCCA GGGTCAACGG CCACCGGCGC AGCGCTGGCA GGCCAGCGCG
CCCTACTGGA TTGCTGCCTG GAAACATCCC TATGCCCAAG CGCTGGCGGA GGTGCGCAAG
GTGCATTTCA ACATCGGCCG CACCGGCAAG ATCGCACCGG TGCTGGAACT GACGCCAGTG
CGCCTCGATG ATCGCACCGT CAGCCGTATC AGCGCAGGTT CACTGTCACG CTGGGAAAAA
CTCGACATAA GGCCGGGCGA CCATATCGCC GTGAGCCTGG CCGGGTTGAC CATCCCTCGG
CTCGACGGCG TGGTCTCTCG TGCCGCCGAG CGCGCTGAAA TGAGCGTTCC GCACGCCAGC
GACTATCATG AATCGAGCTG CTGGCAAGCC GCACCCGGCT GCGAAAGCCA GTTCCGCGCC
AGGCTGGTGT GGCTCAGCGG CAAGAAGGGT TTAGCCTTGC CAGGCGTGGG TCCGGGGACT
TGGGACAAGC TCATTGAAAG CGGCCACATC AGTGGCTTGC TCGATTGGAT GACCCTGAAT
CATGCTGAGC TTGCTAACAT TCCCGGCCTC GCCGAGCGCA GCAGCGATAA ACTGCTCGAC
AGCCTGCAAA CAGCCCGTGA AAGGCCCTTC CAGACATGGC TCAAGGCCAT TGGCTTGCCG
CCTGCCGGGA ATGCAAAACT GCCTGATAAC TGGCACGACC TGGCCGAACG CAGCGTCGAG
CAATGGCAGG CAGAACCGGG TATTGGTCCA GGGCGCGCGG CAAAACTCAG GGCATTTTTT
CAGGACCCAC ACGTACAGGC ACTAAGCCAG CAATTGCAGG CTCAGGGCAT TTCAGGTTTT
AAGTAG
|
|---|
| Protein sequence | MLPALRLMTC ALLTFFTTLS HASQCPDWSH ARASSEITAL QQQIASWDDS YHRQGLSQIP
DELYDQSRQK LNDWRSCFAV STPQANPLKT ATGPLAHPVP HTGVNKLADE KDVKAWLKGR
TDLWIQPKVD GVAVTLVYDE GRLVQAISRG DGTQGQDWTP QARLIKAIPQ QLPQPDSLIL
QGELYWRLTD HVQAASGSVN ARSKVAGMLA RQTISPQQAD AIGLFVWDWP DGPADMAQRL
AGLQAMGFNH SVAYTHPLEN HAQAADWREH WYRNPLPFAT DGVIMRQGQR PPAQRWQASA
PYWIAAWKHP YAQALAEVRK VHFNIGRTGK IAPVLELTPV RLDDRTVSRI SAGSLSRWEK
LDIRPGDHIA VSLAGLTIPR LDGVVSRAAE RAEMSVPHAS DYHESSCWQA APGCESQFRA
RLVWLSGKKG LALPGVGPGT WDKLIESGHI SGLLDWMTLN HAELANIPGL AERSSDKLLD
SLQTARERPF QTWLKAIGLP PAGNAKLPDN WHDLAERSVE QWQAEPGIGP GRAAKLRAFF
QDPHVQALSQ QLQAQGISGF K
|
|---|
| |