| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0306 |
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| Symbol | |
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| ID | 1181915 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 332910 |
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| End bp | 334841 |
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| Gene Length | 1932 bp |
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| Protein Length | 643 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637391675 |
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| Product | sensory box/GGDEF domain/EAL domain protein |
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| Protein accession | NP_790156 |
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| Protein GI | 28867537 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAGATT ACTCCCGTGA CGCGCTGCGA ACGGCCGTCC TGTATGGGCT GCTGTCCATT
TTGTGGTTTA TGGCGTGCGA CATTTTGCTG CCCCTTTTCG TCGACGAACC GGCTCGATTG
GCGTTCTGCC ATCAGATGGC CGGTTACGCC TGGGTGCTGC TCAGCGCGGT GACGATCTTC
GTTGCGCGTG ACAGGTTGAG GAAAATCATC GGTGGCGAGG CGCATTTCGA GCGCCAGCAG
GACGATTACG ACCGGCTGCG GCTGGCCGAG GCGGTGTTCG ACAGCACTCG TGAAGGCGTG
CTGGTCAGCG ATGCGCAAGG GCGGATCGTT CACGTCAATC GTGCATTTGT CGACATCACC
GGGTATCAAG CCGAGGAAGT GCTGGGTTTC AACCCCAGCA CGTTCAAATC CGGCCGCCAC
GGCCCGGAGT TCTACCGGCA GATGTACCAC TCGCTGCTCA GCGTGGGCCA GTGGAGCGGC
GAGATATGGA ATCGACGCAA GAGCGGCGAG ATTTACCCGC AGTGGCAGAC CATTCGCAGC
GTTATGGGCG ACGATGGCCA GCTCAAACAC TTTGTCGCGG TATTCTCCGA CATCACGGCC
ATCAAACGCT CCGAGCGAGA ACTGGCTCAG TTGATCCATT TCGACGCCCT GACCGATTTG
CCCAATCGGC TGCTGCTGAC GGATCGCATC AGTCAGGCGC TGACCTCTGC ACGCGCCAGC
AAGCGCGGCT GCGCGCTGTT GCTGATTGAC CTGGACCACT TCAAGAATAT CAACGACAGC
CTCGGCCACA ACGTCGGTGA CGATGTGCTC AAGGCCGTCG CCGAGCGGCT CAAAGGCCTG
TGCGGCAACG AAACGACCCT GGCACGTCCC GGCGGCGACG AGTTCGCCCT GTTGGTCAAG
AATTGCTCGC AGGTGGTCCG GGCTGCTGCG TTGGCGCAAC AGGTCAGCGA GGTGCTCAAG
GCGCCGTTTG TCATCGCCGC GCATCAGTTG TTTGTCACCG CCAGCATGGG CATCAGCCTG
TATCCCGGCG ATGCACAGAG CGCCGAGCAG TTGTTGCGCA ATGCCGATTC GGCGCTGTTC
AAGGCCAAAA GTGAGGGGCG CGACTGTTAT GCGCTGTACA CAGAGGAACT GACCGCCCAC
GCCCAGCAGC GCGTGCAACT GGCCGGCGAG CTGCGTCAGG CCATCGAACA GGGTGAGTTG
CGGGTTTTCT ACCAGCCGGT CCACGACCTC ATCACCCGTT CTGTCTGCGG CGTCGAAGCG
CTGGTGCGCT GGCAGCACCC TACGCGCGGA ATGGTTTCGC CGGGCGAATT CATTCCCATC
GCCGAACAGA ACGGCCTGAT CGCTGACATT GATGCCTGGG TGCTGAACAC CGCCTGTCGG
CAGATGCGCG CCTGGCTGAC CGAGGGCGTA CCGATTGCAT TCGTCGCAGT CAATGTGTCC
AGCCGCCTGT TCAGCCGCGG CGATCTCGAC CGTCAGGTTG CGCAGGTGCT GCACGATATC
GGGCTTGATC CGGCTTTTCT GGAGCTGGAA GTGACGGAAA GCGCAGTCAT GGAAGACCCC
GAACAGGCGA TCGAGCAGCT GCACCGGCTG CGTGAGCTGG GCCTGAGCCT GGCCATCGAT
GACTTCGGCA CCGGTTACTC TTCACTGTTG CGGCTCAAGC GCATGCCGGT GCAGAAGTTG
AAGATCGACC AGGGTTTCGT GGCCGGGCTG CCGGGTGACG GCGACGATAT CGCGATTGTC
CGAGCCGTCA TCGCACTGGG CGCCAGCCTG GGCATGCGCG TGCTGGCGGA AGGCATCGAA
CAGGCCAGCC AGGCTGCATT TCTGCTGGAG AATGGCTGTC AGCTGGGGCA AGGCTACTGG
TTTGCACGGC CGATGGCTGC GCACCTGATC GACTGGTCTC ACGCGCCTGT TTTTGGCCCT
GGCGCGTCCT GA
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| Protein sequence | MSDYSRDALR TAVLYGLLSI LWFMACDILL PLFVDEPARL AFCHQMAGYA WVLLSAVTIF
VARDRLRKII GGEAHFERQQ DDYDRLRLAE AVFDSTREGV LVSDAQGRIV HVNRAFVDIT
GYQAEEVLGF NPSTFKSGRH GPEFYRQMYH SLLSVGQWSG EIWNRRKSGE IYPQWQTIRS
VMGDDGQLKH FVAVFSDITA IKRSERELAQ LIHFDALTDL PNRLLLTDRI SQALTSARAS
KRGCALLLID LDHFKNINDS LGHNVGDDVL KAVAERLKGL CGNETTLARP GGDEFALLVK
NCSQVVRAAA LAQQVSEVLK APFVIAAHQL FVTASMGISL YPGDAQSAEQ LLRNADSALF
KAKSEGRDCY ALYTEELTAH AQQRVQLAGE LRQAIEQGEL RVFYQPVHDL ITRSVCGVEA
LVRWQHPTRG MVSPGEFIPI AEQNGLIADI DAWVLNTACR QMRAWLTEGV PIAFVAVNVS
SRLFSRGDLD RQVAQVLHDI GLDPAFLELE VTESAVMEDP EQAIEQLHRL RELGLSLAID
DFGTGYSSLL RLKRMPVQKL KIDQGFVAGL PGDGDDIAIV RAVIALGASL GMRVLAEGIE
QASQAAFLLE NGCQLGQGYW FARPMAAHLI DWSHAPVFGP GAS
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