Gene PSPTO_0300 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_0300 
SymbolgabD-2 
ID1181909 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp325765 
End bp327207 
Gene Length1443 bp 
Protein Length480 aa 
Translation table11 
GC content60% 
IMG OID637391669 
Productsuccinate-semialdehyde dehydrogenase 
Protein accessionNP_790150 
Protein GI28867531 
COG category[C] Energy production and conversion 
COG ID[COG1012] NAD-dependent aldehyde dehydrogenases 
TIGRFAM ID[TIGR01780] succinate-semialdehyde dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGCTTA AAGATTCCAC CCTGTTCCGC CAGCAAGCCT ACATCAACGG CCAGTGGCTG 
GATGCGGACG GTGGTCAGTC GATCAAGGTC AACAACCCGG CGACCAACGA GATCCTCGGC
ACTGTGCCGA AAATGGGCGC GGCCGAGACG CGTCGGGCGA TTGAGGCGGC TGACAAGGCG
CTGCCGGCCT GGCGTGCGCT GACCGCCAAA GAGCGCGGTA ACAAGCTGCG TCGCTGGTTC
GAGCTGATGA TCGAGAATCA GGACGACCTG GGTCTGCTGA TGACCCTGGA GCAGGGCAAG
CCGCTGGCTG AGGCCAAGGG CGAGATCACG TATGCAGCGT CGTTTATCGA GTGGTTCGCT
GAAGAAGCCA AGCGCGTGTA CGGCGATGTG ATCCCCGGTC ACCAGCCGGA CAAGCGTCTG
ATTGTGCTCA AGCAGCCGAT TGGTGTGACG GCGGCGATTA CGCCGTGGAA TTTCCCGGCA
GCGATGATCA CCCGCAAGGC CGGCCCTGCG CTGGCGGCGG GTTGCACGAT GGTGCTCAAG
CCTGCGTCGC AAACGCCGTT TTCTGCGTTG GCGCTGGCTG AACTGGCCGA GCGTGCGGGT
ATTCCGGCCG GCGTGTTCAG CGTGGTGACG GGCAGCGCGG GCGATATCGG CAGCGAGCTG
ACCGGTAACC CGATCGTGCG TAAATTGTCC TTCACGGGTT CGACCGAGAT CGGTCGCCAG
TTGATGGCTG AATGCGCCAA GGACATCAAG AAAGTGTCGC TGGAGCTGGG CGGTAACGCG
CCTTTTATCG TGTTCGACGA CGCCGACCTC GACAAGGCCG TCGAAGGCGC GATGATCTCC
AAGTACCGCA ACAACGGTCA GACTTGCGTC TGCGCCAACC GCATCTATGT GCAGGACGGC
GTGTATGACG CATTCGCCGA GAAGCTCAAG GTGGCGGTCG GCAAGCTGAA AATAGGTAAC
GGCCTGGAAG ACGGCATTAC CACTGGCCCG TTGATTGATG AAAAGGCCGT GGCCAAGGTC
AAGGAGCACA TTGCCGACGC TGTCAGCAAA GGTGCGACCG TGCTGACCGG TGGCAACAGC
CTGGAAGGCT CGTTCTTCGA GCCGACTATT CTGGTCAATG TGTCGAAAGA TGCCGCCGTT
GCCCGAGAAG AGACGTTCGG TCCGCTGGCC CCACTGTTCC GTTTCAAGGA CGAGGCTGAG
GCGATTGCGC TGGCCAACGA TACCGAGTTC GGTCTGGCGT CGTACTTTTA TGCGCAGAAC
ATGAGCCGCG TGTTCCGGGT GGCCGAGGCG CTGGAATATG GCATGGTGGG TATCAACACC
GGCCTGATCT CCAACGAACT GGCACCGTTC GGCGGGATCA AGTCGTCCGG CCTGGGCCGT
GAAGGTTCCA AGTACGGCAT TGAAGATTAT CTGGAAATCA AATACCTCTG CCTGTCGGTC
TGA
 
Protein sequence
MQLKDSTLFR QQAYINGQWL DADGGQSIKV NNPATNEILG TVPKMGAAET RRAIEAADKA 
LPAWRALTAK ERGNKLRRWF ELMIENQDDL GLLMTLEQGK PLAEAKGEIT YAASFIEWFA
EEAKRVYGDV IPGHQPDKRL IVLKQPIGVT AAITPWNFPA AMITRKAGPA LAAGCTMVLK
PASQTPFSAL ALAELAERAG IPAGVFSVVT GSAGDIGSEL TGNPIVRKLS FTGSTEIGRQ
LMAECAKDIK KVSLELGGNA PFIVFDDADL DKAVEGAMIS KYRNNGQTCV CANRIYVQDG
VYDAFAEKLK VAVGKLKIGN GLEDGITTGP LIDEKAVAKV KEHIADAVSK GATVLTGGNS
LEGSFFEPTI LVNVSKDAAV AREETFGPLA PLFRFKDEAE AIALANDTEF GLASYFYAQN
MSRVFRVAEA LEYGMVGINT GLISNELAPF GGIKSSGLGR EGSKYGIEDY LEIKYLCLSV