Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_0300 |
Symbol | gabD-2 |
ID | 1181909 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 325765 |
End bp | 327207 |
Gene Length | 1443 bp |
Protein Length | 480 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637391669 |
Product | succinate-semialdehyde dehydrogenase |
Protein accession | NP_790150 |
Protein GI | 28867531 |
COG category | [C] Energy production and conversion |
COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
TIGRFAM ID | [TIGR01780] succinate-semialdehyde dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAGCTTA AAGATTCCAC CCTGTTCCGC CAGCAAGCCT ACATCAACGG CCAGTGGCTG GATGCGGACG GTGGTCAGTC GATCAAGGTC AACAACCCGG CGACCAACGA GATCCTCGGC ACTGTGCCGA AAATGGGCGC GGCCGAGACG CGTCGGGCGA TTGAGGCGGC TGACAAGGCG CTGCCGGCCT GGCGTGCGCT GACCGCCAAA GAGCGCGGTA ACAAGCTGCG TCGCTGGTTC GAGCTGATGA TCGAGAATCA GGACGACCTG GGTCTGCTGA TGACCCTGGA GCAGGGCAAG CCGCTGGCTG AGGCCAAGGG CGAGATCACG TATGCAGCGT CGTTTATCGA GTGGTTCGCT GAAGAAGCCA AGCGCGTGTA CGGCGATGTG ATCCCCGGTC ACCAGCCGGA CAAGCGTCTG ATTGTGCTCA AGCAGCCGAT TGGTGTGACG GCGGCGATTA CGCCGTGGAA TTTCCCGGCA GCGATGATCA CCCGCAAGGC CGGCCCTGCG CTGGCGGCGG GTTGCACGAT GGTGCTCAAG CCTGCGTCGC AAACGCCGTT TTCTGCGTTG GCGCTGGCTG AACTGGCCGA GCGTGCGGGT ATTCCGGCCG GCGTGTTCAG CGTGGTGACG GGCAGCGCGG GCGATATCGG CAGCGAGCTG ACCGGTAACC CGATCGTGCG TAAATTGTCC TTCACGGGTT CGACCGAGAT CGGTCGCCAG TTGATGGCTG AATGCGCCAA GGACATCAAG AAAGTGTCGC TGGAGCTGGG CGGTAACGCG CCTTTTATCG TGTTCGACGA CGCCGACCTC GACAAGGCCG TCGAAGGCGC GATGATCTCC AAGTACCGCA ACAACGGTCA GACTTGCGTC TGCGCCAACC GCATCTATGT GCAGGACGGC GTGTATGACG CATTCGCCGA GAAGCTCAAG GTGGCGGTCG GCAAGCTGAA AATAGGTAAC GGCCTGGAAG ACGGCATTAC CACTGGCCCG TTGATTGATG AAAAGGCCGT GGCCAAGGTC AAGGAGCACA TTGCCGACGC TGTCAGCAAA GGTGCGACCG TGCTGACCGG TGGCAACAGC CTGGAAGGCT CGTTCTTCGA GCCGACTATT CTGGTCAATG TGTCGAAAGA TGCCGCCGTT GCCCGAGAAG AGACGTTCGG TCCGCTGGCC CCACTGTTCC GTTTCAAGGA CGAGGCTGAG GCGATTGCGC TGGCCAACGA TACCGAGTTC GGTCTGGCGT CGTACTTTTA TGCGCAGAAC ATGAGCCGCG TGTTCCGGGT GGCCGAGGCG CTGGAATATG GCATGGTGGG TATCAACACC GGCCTGATCT CCAACGAACT GGCACCGTTC GGCGGGATCA AGTCGTCCGG CCTGGGCCGT GAAGGTTCCA AGTACGGCAT TGAAGATTAT CTGGAAATCA AATACCTCTG CCTGTCGGTC TGA
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Protein sequence | MQLKDSTLFR QQAYINGQWL DADGGQSIKV NNPATNEILG TVPKMGAAET RRAIEAADKA LPAWRALTAK ERGNKLRRWF ELMIENQDDL GLLMTLEQGK PLAEAKGEIT YAASFIEWFA EEAKRVYGDV IPGHQPDKRL IVLKQPIGVT AAITPWNFPA AMITRKAGPA LAAGCTMVLK PASQTPFSAL ALAELAERAG IPAGVFSVVT GSAGDIGSEL TGNPIVRKLS FTGSTEIGRQ LMAECAKDIK KVSLELGGNA PFIVFDDADL DKAVEGAMIS KYRNNGQTCV CANRIYVQDG VYDAFAEKLK VAVGKLKIGN GLEDGITTGP LIDEKAVAKV KEHIADAVSK GATVLTGGNS LEGSFFEPTI LVNVSKDAAV AREETFGPLA PLFRFKDEAE AIALANDTEF GLASYFYAQN MSRVFRVAEA LEYGMVGINT GLISNELAPF GGIKSSGLGR EGSKYGIEDY LEIKYLCLSV
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