| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0179 |
|---|
| Symbol | sun |
|---|
| ID | 1181787 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 199982 |
|---|
| End bp | 201328 |
|---|
| Gene Length | 1347 bp |
|---|
| Protein Length | 448 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637391556 |
|---|
| Product | sun protein |
|---|
| Protein accession | NP_790038 |
|---|
| Protein GI | 28867419 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
|---|
| TIGRFAM ID | [TIGR00563] ribosomal RNA small subunit methyltransferase RsmB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACCCGC GTCTGGCTGC CGCCAAGGCA CTGGCTGCCG TGCTCAGCGG CAAGGCGTCG
TTGAACAGTT CGTTGCCCAC GCAACTGGAC AAGGTCGAGC TACGTGATCG CGGCCTGACC
CAGGACCTGG CTTTCGGGAC GGCGCGCTGG CAGCCGCGCC TGTCGGCACT GGCCGCCAAA
CTGTTACAAA AGCCCTTCAA GGCCGCCGAT GCTGACGTCG AAGCGTTGCT GCTGGTGGGG
CTTTATCAGC TGTTTTACAG CCGCATCCCT GCGCATGCGG CCATTGGTGA AACTGTTGGC
TGCGCCGACA AGCTGAAAAA GCCGTGGGCC AAAGGCCTGC TCAATGCCGT GCTGCGCAAC
GCTCAACGCG ATGGCGAAGC GCTGCTGATC GAACTGGAAC ACGACCCGGT GGTGCGCACC
GCCCACCCAC GCTGGCTGCA AAAAGCCCTG AAAGCCGCAT GGCCGGAGCA GTGGGAAGCC
ATTTGCGCAG CCAACAACGC GCACCCGCCG ATGATTTTGC GGGTCAACCG CCGTCACCAG
CGTCGCGATC AGTACCTTGA GCTGCTCAAG ACTGCCGGGC TGGAAGCGAG CGCGTGCACG
TTCAGTCAGG ACGGTATCGT GCTGGCCGAG CCGTGCGATG TGCGCTCGCT GCCCGGTTTT
GCCGAAGGCT GGATCAGTGT GCAGGACGAA GCCGCGCAAC TGGCCGCCGA CCTGCTGGAG
CTGGCCCCCG GCCAACGCGT GCTCGACGCC TGCTGTGCGC CGGGTGGCAA GACCTGCCAT
TTGCTGGAGG TGCAGCCGCA ACTGAGCGGC GTGGTGGCGG TAGACCTGGA AGCCAAGCGC
CTGGTGCGCG TGCGTGAAAA CCTTGAGCGC CTGGGTCTGG ACGCTGAACT GATCGCCGCC
GATGCCCGCG AGACAGCGCA GTGGTGGGAT GGCAAGCCGT TCCAGCGCAT TCTGCTCGAC
GCCCCGTGCT CGGCCACCGG CGTGATCCGT CGCCACCCGG ACATCAAACT GACCCGCCAA
CTGGACGACA TCGCCGCGCT CGCCACCTTG CAGGGCGAAC TGCTCGACGC GTTGTGGCCC
ACGCTGCAAG TAGGCGGCAT GCTGGTGTAC GCGACCTGCT CGACACTGCC AACTGAAAAC
ACCGACGTCA TCGAGGCGTT TCTGGCCCGC ACCTCTGGGG CCAGAGAACT GGATATCGCC
GGGCAGGCCG GGCAGCCACC GGCCGGCATA AAGCAACCGC ACGGTCGTCA GTTGTTGGCC
CAACAAGGTG GCCACGATGG TTTCTACTAC GCCAAACTGA TCAAGATCGC AGCTCAAGAT
CGCGGCGGCG CAGGAGTAAC CAGTTGA
|
|---|
| Protein sequence | MNPRLAAAKA LAAVLSGKAS LNSSLPTQLD KVELRDRGLT QDLAFGTARW QPRLSALAAK
LLQKPFKAAD ADVEALLLVG LYQLFYSRIP AHAAIGETVG CADKLKKPWA KGLLNAVLRN
AQRDGEALLI ELEHDPVVRT AHPRWLQKAL KAAWPEQWEA ICAANNAHPP MILRVNRRHQ
RRDQYLELLK TAGLEASACT FSQDGIVLAE PCDVRSLPGF AEGWISVQDE AAQLAADLLE
LAPGQRVLDA CCAPGGKTCH LLEVQPQLSG VVAVDLEAKR LVRVRENLER LGLDAELIAA
DARETAQWWD GKPFQRILLD APCSATGVIR RHPDIKLTRQ LDDIAALATL QGELLDALWP
TLQVGGMLVY ATCSTLPTEN TDVIEAFLAR TSGARELDIA GQAGQPPAGI KQPHGRQLLA
QQGGHDGFYY AKLIKIAAQD RGGAGVTS
|
|---|
| |