| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0176 |
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| Symbol | |
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| ID | 1181784 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 197323 |
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| End bp | 198348 |
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| Gene Length | 1026 bp |
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| Protein Length | 341 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637391553 |
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| Product | LysM domain protein |
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| Protein accession | NP_790035 |
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| Protein GI | 28867416 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1652] Uncharacterized protein containing LysM domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGGAAAT CACTACTCGC CCTGCTGCTG TTGACCGCCA GCGGTCTTGC CCAGGCGCAA
GTGCAACTCA GGGAAGGCTA TCCGCAGAGC TACACCGTTG TTGCCGGAGA CACACTCTGG
GACATTTCCG GCAAGTTTTT GCGTGAACCG TGGAAGTGGC GCGAGATCTG GCGGGCCAAT
CCGCAGGTCC ACGACCCTGA TCTTATCTAC CCCGGTGACA CCCTGGCATT GACCTGGGTG
GACGGCCAGC CACGTGTGAC GCTCAACCGT GGCGAGTCGC GCGGCACCAT CAAATTGTCA
CCGCGTGTGC GCAGTACACC GATGGTTCAG GCCATTCCAA GTATCCCGCT GGGTGCGATC
AATGCCTTTC TGATCAGCAA CCGAATCGTC GACAATGCCG AGCAGTTCGA CAAGGCGCCC
TATATCGTTG CCGGCAATGC CGAGCGGGTG CTCAGCGGCA ATGGCGACAG GGCCTATGCC
CGCGGCAAAC TGGACCCGAC GCACACCGTC TATGGCATCT TCCGCCAAGG CAAGATCTAC
ACTGATGCGC AGACCAAGGA AGTGCTGGGC ATCAACGCTG ATGACATCGG CAGCGCTGAA
GTGGTTGCCA CCGAGGGCGA TGTCTCGACC CTTAGCCTGC AGCGTTCCAC GCAGGAAGTG
CGTTTGGGCG ACCGGCTGTT CGCCAGCGAA GAACGCTCGA TCAACTCGAC CTTTCTGCCC
AGCGCTCCGC AGACCCCCAT AGAAGGTTTG ATTCTGGATG TGCCGCGCGG TGTAACCCAA
GTCGCCGTCA TGGATGTGGT CACCCTCAAC AAAGGCAAAC GTGACGGTCT GACCGAAGGC
AACGTGCTGG CGATCTACAA AACCAGCGAA ACGGTACGTG ACCGAATCAC CGGCGAACAG
GTAAAAATCC CCGACGAACG GGCTGGCCTG CTGATGGTTT TCCGCACTTA CGACAAGCTT
AGTTACGCCT TGGTCCTGCA AGCGAACCGA TCTTTGGCCA TCATGGACAA GGTTCGAAAT
CCGTAG
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| Protein sequence | MRKSLLALLL LTASGLAQAQ VQLREGYPQS YTVVAGDTLW DISGKFLREP WKWREIWRAN
PQVHDPDLIY PGDTLALTWV DGQPRVTLNR GESRGTIKLS PRVRSTPMVQ AIPSIPLGAI
NAFLISNRIV DNAEQFDKAP YIVAGNAERV LSGNGDRAYA RGKLDPTHTV YGIFRQGKIY
TDAQTKEVLG INADDIGSAE VVATEGDVST LSLQRSTQEV RLGDRLFASE ERSINSTFLP
SAPQTPIEGL ILDVPRGVTQ VAVMDVVTLN KGKRDGLTEG NVLAIYKTSE TVRDRITGEQ
VKIPDERAGL LMVFRTYDKL SYALVLQANR SLAIMDKVRN P
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