Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_0169 |
Symbol | aroE |
ID | 1181777 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 189618 |
End bp | 190442 |
Gene Length | 825 bp |
Protein Length | 274 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637391546 |
Product | shikimate 5-dehydrogenase |
Protein accession | NP_790028 |
Protein GI | 28867409 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACCAGT ATGTCGTCTT CGGTAACCCC ATTGGTCATA GCAAGTCGCC GCTGATTCAT CGCCTGTTCG CCGAGCAAAC CGGCCAGGCA CTGAATTACC AGACCGCGCT GGCACCGCTG GACGATTTCA CGGCGTTTGC CCAGGCGTTT TTCCAGACCG GGCGTGGTGC CAACGTGACG GTGCCGTTCA AGGAGGAGGC GTTTCGCCTG GCCGACAGCC TGACCGAGCG CGGGCAGCGT GCGGGGGCCG TCAACACCCT GAGCAAGCTC GATGACGGGA CGCTGCTGGG CGACAACACC GACGGTGCCG GGCTGGTGCG CGACCTGACG GTCAATTGCG CATGCAGCTT GCGCGGTCAG CGCGTGTTGT TGCTGGGCGC GGGCGGTGCG GTGCGTGGCG CGCTGGAACC GCTGCTGGCA GAAAAGCCCG CCGTACTGGT GATCGCCAAT CGTACGGTCG AAAAAGCCGA ACGACTGGCT CAGGAATTTG CCGATCTCGG CCCGGTGTTT GCCAGCAGCT TCGACTGGCT TGAAGAGCCG GTGGACCTGA TCATCAACGC CACGTCTGCC AGCCTGGCCG GGGAGCTGCC GCCCATCTCC CCGAGCCTGA TCCAGCCTGG TGCGACCTTT TGCTACGACA TGATGTACAG CAAAGCGCCC ACTGCTTTCT GCCGCTGGGC CACAGAACAG GGTGCGGCGC AGTCGGTTGA TGGCCTGGGG ATGCTGGTCG AGCAGGCGGC AGAAGCCTTC CTGTTGTGGC GCGGCGTGCG CCCGGATTCA GCGCCTGTAT TGGCGGAGTT GCGCAGATTG CTGGCTGCGG GTTGA
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Protein sequence | MDQYVVFGNP IGHSKSPLIH RLFAEQTGQA LNYQTALAPL DDFTAFAQAF FQTGRGANVT VPFKEEAFRL ADSLTERGQR AGAVNTLSKL DDGTLLGDNT DGAGLVRDLT VNCACSLRGQ RVLLLGAGGA VRGALEPLLA EKPAVLVIAN RTVEKAERLA QEFADLGPVF ASSFDWLEEP VDLIINATSA SLAGELPPIS PSLIQPGATF CYDMMYSKAP TAFCRWATEQ GAAQSVDGLG MLVEQAAEAF LLWRGVRPDS APVLAELRRL LAAG
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