Gene PSPTO_0086 details

Gene Information

• Locus tag: PSPTO_0086
• Symbol: radC
• ID: 1181694
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 108181
• End bp: 108855
• Gene Length: 675 bp
• Protein Length: 224 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 637391463
• Product: DNA repair protein RadC
• Protein accession: NP_789945
• Protein GI: 28867326
• COG category: [L] Replication, recombination and repair
• COG ID: [COG2003] DNA repair proteins
• TIGRFAM ID: [TIGR00608] DNA repair protein radc

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTATTC GCAGTTGGCC CGCGGCCGAA CGCCCGCGGG AACGCTTGTT GGAGCTGGGA 
GCGGCGAGCC TTTCGGACGC CGAATTGCTG GCGATCTTTT TACGCACCGG CGTGGCCGGA 
AAAAGCGCTG TAGACCTGGC GCGTCACCTC TTGAATCAAT TCGACGGGCT CAGATCGTTA 
CTGGATGCTG ATCAGCCCGC TTTCACCGCT CAACTGGGGC TGGGACCGGC AAAATTCGCT 
CAGTTACAGG CCGTCATGGA GATGGCGCGC CGGCACATGG CCGAGTCATT GCGCCGCGAT 
TCAGCGCTGG AAAACCCGGC CCAGGTGCGT AACTACCTCA AGGCCCAGCT TCGACACGAA 
CCGCATGAAG TCTTCGCCTG CCTGTTTCTC GATAACAAAC ACCGGGTCAT GACCTTCGAG 
ATCCTGTTTC GCGGGACGAT CAATGCATCC TACGTGCACC CACGTCAGGT AGTGAAGCGG 
GCGCTGGCGC ACAACGCCGC CAGCCTGATC CTCTGCCACA ACCATCCCTC GGGCATTACA 
ACGCCCAGCC GCTCCGACAT CGACCTGACC AAGCGCCTCA AAGAAGCCCT GAAGCTGGTG 
GATGTTCATG TGCTTGACCA TGTGATCGTA GGTGACGGCG AGCCGTTGTC GATGGTGGAG 
AAGGGATTGA TGTAG 

 

Protein sequence

MSIRSWPAAE RPRERLLELG AASLSDAELL AIFLRTGVAG KSAVDLARHL LNQFDGLRSL 
LDADQPAFTA QLGLGPAKFA QLQAVMEMAR RHMAESLRRD SALENPAQVR NYLKAQLRHE 
PHEVFACLFL DNKHRVMTFE ILFRGTINAS YVHPRQVVKR ALAHNAASLI LCHNHPSGIT 
TPSRSDIDLT KRLKEALKLV DVHVLDHVIV GDGEPLSMVE KGLM