| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0008 |
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| Symbol | |
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| ID | 1181616 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 11067 |
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| End bp | 14366 |
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| Gene Length | 3300 bp |
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| Protein Length | 1099 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637391388 |
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| Product | type I site-specific deoxyribonuclease, HsdR family |
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| Protein accession | NP_789870 |
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| Protein GI | 28867251 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCAGT CACCGGAGAA AGTCGGGGTT GAACTGCCCG CCATTAATTG GCTGGTCAAG
CTGGGCTACA CCCATCTATC CAGTAATCAG GTACAGGTTG AATATCGTCA CCTGGCACCG
GTATTGGACG ATGTGTTGCA GGCTCGACTG CTGATCCTCA ACCCGTGGCT GGAGAGCGTA
CCCGGTGGCA TCCCTACCGC ACTGATCGAG CTACGTAAAC GTCTCAACGA TGAGCTGTTG
CCCGCGAATA AGGCGTTCTG GGAACAGGTG GTGCACCGTT CGGATATTCA GGTGAAGGAC
GTCGAAGGCA GGCCGCGTAG TGTGCGTTTC TTCGACGCCA GTGATGCCGC CAACAACGAC
TTCCATGTGG TTGATCAGTA TGTGGGGCGC AACGCTGATG GGGATTTTTT CCGTCCCGAC
CTACTCCTGT TTGTGAATGG CCTGCCCCTG GCCATCATCG AATGCAAAGC CAGCCATCAC
CGTCTGGATG AGGCCTTGGG GCAACTGGAT GGCTATCAGA ACTGTTTCCC AACCCAGTTT
GTATTCAACC AGGTATGCGT TGGGCTTAAT CGGCGTGAGG GGGCATATGG TGCGATCCTT
ACCAAGCCTG CGTACTACGC CCGCTATCGG TTGCAGGCGC AGGAATCTGC TGCTGTAGCT
GCTTTGCTGG GCGATGTCCC GAGTGAGCAG GAAAGCCTGC TGTGGGCATT GTTCGAGCCG
AGTCGCTTCC TGCAACTGAT TACACATTTT GCGCTGTTCG AAACCCGCGA CGGCAAGACA
ATGAAAAAGC TGCCGCGCTA TCAACAATGG CGGGCCGTGC GCAAAACGTT GGATCGCCTG
TGTGCTCCAA AACCCATGGG CGGTGTTGTC TGGCACACCC AGGGTAGCGG TAAGTCCTTG
ACCATGGCCC TGCTCGCTCG CATGTTGCGT GCCGATAGCA CCGGTTTGAA CAACCCTACT
GTGTTGGTAC TGACCGACCG CAAAGACCTC GACAAACAGA TCTTCGATAC TTTCCATGCA
GTGGGCATCA GTGCTATTCA GGCCGTGTCG GTTGAAGGCT TGCTGAAGAT GTTGTCCAAC
GACTACGGCA GTGTGTTCAC CAGCACGGTG CAGAAGTTCC AGGAGAACGA GCAGCCCGGT
GAGCAGCCTG CTGTGACTCC TGATGAGGAA GACAATGCCC TGCAAGCAAC CCGGCACCGG
CGGATTCGCG AGGAGAAGGA CTTCTTCATC CTGCATGAGC GCAATGTTCG CCACCGGCAA
GTGGATGAGA ACGGTGTGCT GGTGAAAGCC AAGTGGGAAG AAATCAGCCG GGAGAAGGTA
CATTTCCGGG TGTTGAGTAC CAAATCCAAT TTCTATGTGC TGGTCGATGA AGCTCACCGT
AGCCAGTACG ATTTCCTCGC GGCTTTTATG CGCGCCAGTT TGCCCAACGC CAAGTTCATT
GCCTTCACAG GTACGCCGCT GCTGCAAGAG GACAAACACA CACTGGGTGA GTTTGGCGGT
GGTGAATACA TCGACGAATA CCGCCTGCAT GAAGCGGTGG CGGATGGCGC GACCCTGTCC
ATCAAATACC AGGATGCCTG GGTAGCATTG TCGGCCAACG CTGAATTGGA TGCTGCATTC
AAAGAGCAGT TCTCTGGCCA GAGTGAAGCT CGCCAGCACG AGCTTAAGCG CGAACTGCTG
CGCCGCTGGC GTCAGGCCGG TAACCGTATG GAACAGGTCG CTGAACATCT GGTCGAGCAC
TTCCTCAGTA ACGTAAAGGC CAAGGGCTTG AAGGCCATGC TGGTGTGCGA CGGACGCGAT
ATGGCAGTGG GTTACAAGGA TCTGCTCGAT GCAATCATGG CCGAGCGAGT GCAAAAAGGG
CTGCCAACCT TTGACAGCAA GGTGGTTATT TCCCTGGCCA GCATCACCGC TTCCCGCACG
GGTGCTTCTG CTATGGAGGA GGCATCAGAG TACGAGGTCG ACCTCGACAA GATCCAAAGC
ATCGAGGAAC GGGTCAAGGC CGAAGTGAAA GCCGGAAACA CCCCGGTGGC CATGCCGTCC
GAGCAGATTG GCAACTTTGT CAGCAAGCTG TTCCCCCTGC CCTACGGAGA GGAAAGTAGT
GGGTTGGATG GTAAACCGCA GGCGAACAAC GTTGGGCTGA TCATTGTCTC CGACATGCTC
CTGACCGGGT GGGATGCCCC GATTGTCGGC ACTATGTACC TCGACAAACC GCTCAAGGAA
CACACCCTTT TGCAGGCTAT CGCACGGGTG AACCGCACCC TGCCCGGCAA GAATGCCGGT
TACATCGTGG ATTACCACGG AGTGGTCGAG CACCTCGACC ATGCGCTGAA AATTTACGGC
GGCGAAGTGA AGCCTTCACA GGTCTGGGAA GGTGTCGAAA CCGAACTGCC CAAGCTGCAA
GCCACGCTTG ACCGCATACT TAAGCTGCTG CCGAAAAAAC ATGATCCGGT TGCGCAGCGT
GAGGGGTACA AGACTGACGC CGAGCGTTTC CTAGATCCAG CTACCAGACT GGACATGGTC
GAAGAGTTCC TGGACTTGGT GAAGCAGTTC AACCGCTCTG TGGACATCAT TCTGCCGGAT
GTGCGCGGCG TGCCCTTCAA GCCCTACTTC ACCCTGTTAG GTGAAATACG GTTGATGCTG
CGGGACAAGC TGCCAGGTAA TACCTACAAG GAGCGCATCA CCAAGCTGGA GTCTGTACTG
CTTCAACAGC TGCTGGATGA GTACGTTGCC GCCAGTCCGG CTAAGAGCCT ATTGGGCCAT
GAGGTGTCGA TTCTTGATGC CAGCGACATG GCGCGCCTGA AGCAGCTGGC CAGCCCTGGT
AGCCGAGCCC TGGTGATGAA GAACCAGCTG AAACATACAA TTGTCACCGG CAAGGACAAA
GACCCTGCAT TCTTCGACAA GCTGGCTGAG GAGCTGCAAA AGCTGCTGGA AGAAGAAAAG
GCGGGTCGCA TTACCCAGGC TAAATTTCTG GAGCAACTGG AATTGTTCGG TCAGCGCATC
CAGGACAAGG ACAACACCGG ATTTATCAAA CCCGCACATT CAGCGGTGTA TCACTACCTA
ACCGCGCTAC TGGCCGAGGA CACGGCCAGG GTGGCAACGA CCAAACTGTT CGAGGATGGA
GAGCTGAGCC GGACGGTCGC CACCGACAAC TGGAAGAAGA TGCCGGATCT GCACCCGGAC
ATCAGAGACC ATCTGCGCGG GTTGTTGATG CCGCTGGCGG GGTGGGAGCG CTCAGTAGCA
CGTGAACACG CCAAGCGAAT CTTGATGTAT AGGAATTTCA ATAATTCCTA TACAGGGTAA
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| Protein sequence | MSQSPEKVGV ELPAINWLVK LGYTHLSSNQ VQVEYRHLAP VLDDVLQARL LILNPWLESV
PGGIPTALIE LRKRLNDELL PANKAFWEQV VHRSDIQVKD VEGRPRSVRF FDASDAANND
FHVVDQYVGR NADGDFFRPD LLLFVNGLPL AIIECKASHH RLDEALGQLD GYQNCFPTQF
VFNQVCVGLN RREGAYGAIL TKPAYYARYR LQAQESAAVA ALLGDVPSEQ ESLLWALFEP
SRFLQLITHF ALFETRDGKT MKKLPRYQQW RAVRKTLDRL CAPKPMGGVV WHTQGSGKSL
TMALLARMLR ADSTGLNNPT VLVLTDRKDL DKQIFDTFHA VGISAIQAVS VEGLLKMLSN
DYGSVFTSTV QKFQENEQPG EQPAVTPDEE DNALQATRHR RIREEKDFFI LHERNVRHRQ
VDENGVLVKA KWEEISREKV HFRVLSTKSN FYVLVDEAHR SQYDFLAAFM RASLPNAKFI
AFTGTPLLQE DKHTLGEFGG GEYIDEYRLH EAVADGATLS IKYQDAWVAL SANAELDAAF
KEQFSGQSEA RQHELKRELL RRWRQAGNRM EQVAEHLVEH FLSNVKAKGL KAMLVCDGRD
MAVGYKDLLD AIMAERVQKG LPTFDSKVVI SLASITASRT GASAMEEASE YEVDLDKIQS
IEERVKAEVK AGNTPVAMPS EQIGNFVSKL FPLPYGEESS GLDGKPQANN VGLIIVSDML
LTGWDAPIVG TMYLDKPLKE HTLLQAIARV NRTLPGKNAG YIVDYHGVVE HLDHALKIYG
GEVKPSQVWE GVETELPKLQ ATLDRILKLL PKKHDPVAQR EGYKTDAERF LDPATRLDMV
EEFLDLVKQF NRSVDIILPD VRGVPFKPYF TLLGEIRLML RDKLPGNTYK ERITKLESVL
LQQLLDEYVA ASPAKSLLGH EVSILDASDM ARLKQLASPG SRALVMKNQL KHTIVTGKDK
DPAFFDKLAE ELQKLLEEEK AGRITQAKFL EQLELFGQRI QDKDNTGFIK PAHSAVYHYL
TALLAEDTAR VATTKLFEDG ELSRTVATDN WKKMPDLHPD IRDHLRGLLM PLAGWERSVA
REHAKRILMY RNFNNSYTG
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