Gene SO_4589 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_4589 
Symbol 
ID1172174 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp4783665 
End bp4784666 
Gene Length1002 bp 
Protein Length333 aa 
Translation table11 
GC content46% 
IMG OID637346300 
ProductAraC family transcriptional regulator 
Protein accessionNP_720105 
Protein GI24376062 
COG category[K] Transcription 
COG ID[COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCTTAAAT TGACAAAATT TACGGATTGC ACGCCATTGA ACGTGGCGAT TTTAGCGTTA 
CCTGGCAGTT TAACTTCAGC GGTATATGGC TTAGAAGAAA TGTTATTAAT GGCCAACACC 
TTGGTGCTAA AAGAAGAACA TCTGCCGTTG AGTGCGACAC GATTCGTGGT AACTCGATTA 
TCGCTTGCTG AGATCTCACT CGACGATACT TATCAATTAG TCATTATTCC GCCCAGCATA 
GAGACTGACT TTTATTTCAA TGTGGCGCCT GAATTACGGA TATGGTTGCA ACGGCAACAT 
GCCCAAGGGG CGATTGTTTG CTCCGCCTGT GCGGGAGCTT TTGTGTTAGC GGCGTCGGGG 
TTACTCGATG GGTGCAAGGT GACAACCCAT TGGGGATTGG TTGATGCGTT TCAAACTCAG 
TACCCACAGC TTGAACTTGA TATAGACAAA ATCATGGTCA ACGAGGGTGA CATTATCACC 
GCTGCGGGCA TGATGTCGTG GTTAGACTTG GGATTAGAAT TAGTCGCACA GTTTTGCCAT 
GTGAAGGTGA TGCGCCAGTT GGGCAAGCAT CTGGTTATCG ACACAGGCAA CCGTGAACAG 
CGCTATTATC AACAGTTTCT ACCTAGGCGA GATCATGGGG ATCAAGCCAT CCTTGGTCTG 
CAAAATCGTT TACAAACAGG TTATGCTCAG CCCATTAGCA TTGCCGCTTT GGCGCAGCAA 
CTTTGCATGG GCGAACGTAC CTTTTTGCGG CGCTTTGTGA AAGCGACAGG ACTTAAGCCT 
AATGAATATC TGCAAAAACT CAGGATCCAA AAAGCTTGTG ACTTACTCGA AAATGGTTCA 
CTCAGTTTCG AGACAATTGC TCATCAGGTT GGCTATGAGG ATGTAAGTGC TTGTCGCAAA 
GCGTTTACCC GTATTACGGG CTTGAGTCCA AGTGCATTTC GGCAGCGATT TAGCTCGATT 
TCACCTGTGC TAATACCTGT TGACGATAGC TCAATAAACT AA
 
Protein sequence
MLKLTKFTDC TPLNVAILAL PGSLTSAVYG LEEMLLMANT LVLKEEHLPL SATRFVVTRL 
SLAEISLDDT YQLVIIPPSI ETDFYFNVAP ELRIWLQRQH AQGAIVCSAC AGAFVLAASG 
LLDGCKVTTH WGLVDAFQTQ YPQLELDIDK IMVNEGDIIT AAGMMSWLDL GLELVAQFCH 
VKVMRQLGKH LVIDTGNREQ RYYQQFLPRR DHGDQAILGL QNRLQTGYAQ PISIAALAQQ 
LCMGERTFLR RFVKATGLKP NEYLQKLRIQ KACDLLENGS LSFETIAHQV GYEDVSACRK 
AFTRITGLSP SAFRQRFSSI SPVLIPVDDS SIN