| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_4479 |
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| Symbol | |
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| ID | 1172074 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 4667254 |
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| End bp | 4669104 |
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| Gene Length | 1851 bp |
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| Protein Length | 616 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637346195 |
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| Product | sigma-54 dependent transcriptional regulator |
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| Protein accession | NP_720000 |
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| Protein GI | 24375957 |
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| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAGCAA AACCGCATTT TCCAACAATA CAACCATGGC TAGCCGATTC GTGGCAACGC
AGTATCGGCG CAGGCTTGTC GGAGTTTCAT GCCGCCGATG ATCTTAGGCT CTCTCATGCA
GACCTAAAGC ATAAACATGA GCAATATCAA CAGCTCATCG AGCTGGTGCA ATCCCATGCT
TTACCTTTAT TTAACCAACT CATGGCGCAA TCCAATAGCC GGTTATTGCT CTCCGATGCT
GACGGTTATG TGCTGAAACA TTGGGGCGTG AGTCGTTATT CCAGTAAGTT AGCGGATGTG
GCGCTTGATA TTGGGGTTAA CTGGCTTGAA CAGTATAAAG GCACCAATGC CATTGGCACG
GCGCTCATGG CTAAGCAAGC GGTCTCAGTG GTTGGAGAGC AGCATTTTAT CCGCCAAAAT
CGTTTTATGA GTTGTACTGC TTGCCCGATT TTTTCGCCCC AAGGCGAGAT GCTCGGGGTA
CTCGATATCA CCAGTGAGCA ACAGCGGCAT TCACAACAGA CCTTAATGTT AGTGTCGAGT
TTGGCGCAGC AGGTTGAGAC GGCGTTGTTG TGCCATTTGC CCGATAGTCA CTATCGGATT
GATTTAGCGG CCGAGCCAAG TTTATTAAGT TCTGGCTGGC AAGGCATAGT GATTGCCGAC
AGCGAGGGGC GAATTGTGGG TTGTAATCCC ATGGCAAAAC AATTGCTGAG TCAAGCCAAG
CTGGGCGATA GCCTAGAGCT GCATTTGGGG GATAGCTGGA CGCGTGCCGG GGGCTTCCAT
CGGGATTTGG CCCTACATTT ACACACCCAG GCGTTGGGTG TTACGCAGAC CAAAAGTGCG
AAGACGATTC AAGATAAGCC GCAGAGTCAA TTGGGGGTAA GGTTTCGCGA TCCTTTACTT
GAGCGGGCTT GGCAGCAGGC GAATAAGGTC ATCACTAAAC AAATCCCTTT GCTGGTGCTC
GGTGAAACTG GGGTGGGTAA AGAGCAATTT GTCAAAAAGC TCCATGCCCA GAGCTCGCGC
CGCGCGCAGC CTCTAGTGGC GGTGAATTGC GCCGCGCTAC CAGCCGAGTT AGTTGAGTCG
GAGTTATTTG GTTATCAGGC GGGCGCTTTT ACTGGGGCGA ATCGTAGTGG CTTTATCGGT
AAGATCCGCC AAGCCCATGG TGGCTTTTTG TTCCTCGATG AAATTGGCGA GATGCCGCAG
GCGGCACAGA GCCGATTGCT GAGGGTGTTG CAGGAGCGTG AAGTGGTTCC CGTCGGCAGT
AATCAAAGCG TTAAGGTCGA TATTCAGATC ATCGCCGCGA CCCATATGGA TTTAGAGTCG
CTGGTGGCCC AAGGGCTGTT TCGTCAGGAT TTGTTTTATC GTTTGAATGG ATTGCAAGTG
CGATTGCCTG CACTACGTGA GCGGCAGGAT ATTGAGCGTA TTATCCATAA ATTGCATCGG
CGCCACCGCA GCGGTCCACA AACCTTATGC ACTGAGTTAT TGGGGCAACT GATGCGTTAC
GATTGGCCGG GTAATCTGCG AGAGTTAGAT AATTTGATGC AGGTGGCTTG TTTGATGGCC
GAGGACGATG AGGTGTTAGC GAGAGCGCAT TTGCCCGAAC ATTTAGCCAA AAAGTTAGTC
AATAAGCCGC TTGCGGTTTA TGAGAGACAA CATGTTGAAA ATCCGCAAAA TCCCCGCGAT
AAGGATGATA TCGGTCGTCA CTCGGCCGAC TCGCTCCACG GAGCGATAAA TCAGAATGTG
CTGCAAGCTT ACCGAGCCTG CGAAGGCAAT GTCAGCCAAT GTGCTAAGCG TTTAGGTATT
AGCCGTAATG CCTTGTATCG CAAATTAAAG CAGCTTGGGA TTAAAGATTA A
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| Protein sequence | MTAKPHFPTI QPWLADSWQR SIGAGLSEFH AADDLRLSHA DLKHKHEQYQ QLIELVQSHA
LPLFNQLMAQ SNSRLLLSDA DGYVLKHWGV SRYSSKLADV ALDIGVNWLE QYKGTNAIGT
ALMAKQAVSV VGEQHFIRQN RFMSCTACPI FSPQGEMLGV LDITSEQQRH SQQTLMLVSS
LAQQVETALL CHLPDSHYRI DLAAEPSLLS SGWQGIVIAD SEGRIVGCNP MAKQLLSQAK
LGDSLELHLG DSWTRAGGFH RDLALHLHTQ ALGVTQTKSA KTIQDKPQSQ LGVRFRDPLL
ERAWQQANKV ITKQIPLLVL GETGVGKEQF VKKLHAQSSR RAQPLVAVNC AALPAELVES
ELFGYQAGAF TGANRSGFIG KIRQAHGGFL FLDEIGEMPQ AAQSRLLRVL QEREVVPVGS
NQSVKVDIQI IAATHMDLES LVAQGLFRQD LFYRLNGLQV RLPALRERQD IERIIHKLHR
RHRSGPQTLC TELLGQLMRY DWPGNLRELD NLMQVACLMA EDDEVLARAH LPEHLAKKLV
NKPLAVYERQ HVENPQNPRD KDDIGRHSAD SLHGAINQNV LQAYRACEGN VSQCAKRLGI
SRNALYRKLK QLGIKD
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