Gene SO_4476 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_4476 
Symbol 
ID1172071 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand- 
Start bp4664291 
End bp4664782 
Gene Length492 bp 
Protein Length163 aa 
Translation table11 
GC content47% 
IMG OID637346192 
Productspheroplast protein y precursor, putative 
Protein accessionNP_719997 
Protein GI24375954 
COG category[N] Cell motility
[P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3678] P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGAAAA CATTATCTCC TTTAAAAGCT AGCTTGTTTG CCATCTTAGC AAGCTCGACG 
GTATTGGTGA CGACAGTGAG CGCTGAGCCT AGCCAAGAGT GCGATCATCC TCGCAGTGAG 
TTTCATAAAC GTGGCGATCG CATGGGCCAT GACGGCATGC ACAAAATGTT TGAAGGCTTG 
GAATTAACCG ATACACAAAA GGCAGACATT AAAAAACTGT TTGCCGAGCA ACGTGCTGCA 
CGTAGCGACG ATAAGCCCAC CAAGGAGGAG CGTTTAGCAC GCCGTGCAGA AATGCATGCG 
TTGATCACCG CAGCTACATT CGATGAGACA CAAGCTAAGG CATTGATCGG TGCCCAGCAG 
GAAAAACGTC AAGCGCAAGC CATTGAAAGA ATGAAGATGC AGAATCAAAT TTACAACCTG 
CTGACGCCAG AGCAACAAGC TAAGTTTAAA GCGCGATTTG AAGCACACAC TGGTAAAGAA 
CCTCGCAGTT AA
 
Protein sequence
MMKTLSPLKA SLFAILASST VLVTTVSAEP SQECDHPRSE FHKRGDRMGH DGMHKMFEGL 
ELTDTQKADI KKLFAEQRAA RSDDKPTKEE RLARRAEMHA LITAATFDET QAKALIGAQQ 
EKRQAQAIER MKMQNQIYNL LTPEQQAKFK ARFEAHTGKE PRS