Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_4324 |
Symbol | |
ID | 1171929 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | + |
Start bp | 4512635 |
End bp | 4515265 |
Gene Length | 2631 bp |
Protein Length | 876 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 637346054 |
Product | GGDEF domain-containing protein |
Protein accession | NP_719849 |
Protein GI | 24375806 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTTAGGG ATGAAGATGA GACTACCCCA CCTCGAGCTC GTGAGGTTGA GCGCTTAAAA AAGAGACTTT ATCGCCTTAA ATATTTGGCA CATAAGTACA AGCGTGCGGA AGTGGTTCAA AATGCGTTAC TCGAATTGTC CCATATTGCC ACTCAGGTTT CCTCGCTGGA GGAATTTTAC TTAGGGGTTC ACCACCATCT AAAACAGCTT ATCTCCGCGG ATAATTTTTT TATCGCGACT CTCGATGTGA ATAGCGGTGC CATTTCAGTT CCCTTCTTTG CGGATGAGAA AGACGCGCAT CCTTCCCAAC TTTATCCAGA GCAGTCACTA TCAACACTGT TACAGCAAGG GTTAACAGGT TATGTATTTC GCACGGGACA AACCCTATTG TGCGATGAAT CTAAAGTTGA TGAGCTAGTC AACGCAGAAG AGATTGTCAA CCTAGGTTCT CCTTGTCACC TTTGGCTGGG AGTGCCCATT AAGCATGAAG ACATAGTCAC TGCGGTACTT GTAGTGCAAA CCTATGATAC CAATGTGAGT TATGGCGATA TCGAAGTCGA GTTAATGACC TTTATTTGCC ACCATATTAC TGGCGTGATG GAAAGGCTTA AGCATCAAGA ACAATTAGAG CAAGCTATAC AACAACGTAC TAAAGAGCTT AGCCAAGCCT ACGATAAGCT TAAGCAAGAA GTGTATGAGA GGCGCAGAGC TGAGCGACTC CAAAAATCCT TATTTGAAAT TGCAGAACTA GCAAGCTCTG GTTCGGATAA TCCAGTGTTT TACACTCAGC TACATAATGT AATCCGTCAT CTGATCCCAG CCAATAACTG CTACATTGCC CTGTTAAATG AGGAAAGTAC CCACTTAACC TTCCCGTTTT ATGTCTCCCA AATAGAAAAT CAACACCCTG GGGCTCGGCC ATTACAGGAT GGGCTCACAG AGTATATGCT CAAACACAAG CGCCCCCTGC TACTAGACCA AAATGATATT AATAACCTGA TTGCCGCAAA AGAAATTTAC GCTAAGGCGC CGACGCTTAA TCACACCCAA ACGATGCATC AATGGATTGG CATCCCGTTG TTTATCCATG ATGAAGTACG CGGCGCGCTA ACCATTTATA GCTTTAGCAT GACTCAAAAC TACCAAACGA AAGATTTGGA GTTACTTACC TTTGTATCAC AGCATATTGG GGCTGCGATC GAGAAAAAAC TCGCCGCGGA GTCATTACGC CGTAGTTATG AAGAGCTAGA AGAAAAAGTG GCTGCTCGGA CAACAGCCCT TGCTGAACTC AATAAAGATC TAGAGAAAGA GATCCGCCAG CGCCGCAATA TGGAAGCAAA ACTCGTCCAT GATGCTAAAC ACGATGCGCT AACCGGACTG CCCAATCGCG CCATGTTTAT GGAGCGACTT AATCACGCTA TTAAACACGT TCGCCGCCAT AGCCTAGAGC AGTTTGCCCT GTTGTTTATC GATCTTGACC GCTTTAAGCT CATTAACGAC ACCATGGGAC ATTTAGAGGG CGATAGGTTT TTAATTGAAA CAGCCACTCG CTTACGTTCC TGTATCCGCA GTAACGATAC TCTAGCCAGA CTCGGTGGTG ATGAGTTTGT CATCCTGCTC GATACCATCA ACGACATGAA CGATGCGCGT GATGTTGCCG AACGGGTTAT CCGAAAAATC TCCCAGTCCT ATCATTTTGG GACGATCGAG TTCCATTCGG GTGCCAGCAT CGGGATTACT ATCAGTGGTA ATAAGTTGGA TACCAGTGAG TCAATGTTAC GCAATGCCGA CACAGCGATG TACCAAGCCA AGGCAAATGG TAAAGGTTGT TATGTGATTT TTGACGATAG TGCCTCACAG CAAAAAATGC AGGATATTGC TTTCGAGAAT GATTTTAGAC AGGCACTGCA AGCGGATGAG TTACAGCTCA ACTTCCTGCC GATTGTCGAT TTACAAACCA GACAAACCCG TTCCTTAGAA TGTCGATTAA GCTGGGAGCA CCCCCAATGG GGAAGTATCC CACAGGAAGT CCTGAACAAA TTAGCCGAGC AAGCAAACTT ACAAGTTGAG CTGGATAAGT ATGCGATTCG CTTATTGGAT AAGTGTTATC ACCAACTATT GATAAGCCAT GGAGATAACC TTGATTTACA TCTTATGCTT TCCAGTCAAC ACCTTAAGCA TAAGCATGTA CTACGTGGGC TTAAAACCAC CCTAAAGCAA ACTCAGCTTC CTCTCTCTCA GTTATGGTTA TTTTTTAATG AAAAAGCCTT GGTTCAAGAA ACGGAGAATC ACATTAGCGG CTTTGAATTA TTAAATAAAC TGGGCGTGAA CTTAGGGATT AGCCACTACG GAAGCGGTCA TAGTCCGTTA AATAGTTTGT TGTTTCTGCC ATTAAAAGGC CTCAAGCTTG ATGCGAATAT CACTAAACAA TTACAGGATG AACAACATAT TAAGCTAATG TCGGCCTATC AAAAGGCGGC CTCAACCTTG GAGTTACAAA CCTTTGTCGA CGGGCTGCAA TCCCCTGAGC AAATCAATAT ATTTCATGCG CTAGGTTACC GCTTTGGCCA AGGTTGTGCC TTAGCCTCTC CTTTTGCCTT AGTGGAAACG CAGCAACTGG TTTGCGCATA A
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Protein sequence | MFRDEDETTP PRAREVERLK KRLYRLKYLA HKYKRAEVVQ NALLELSHIA TQVSSLEEFY LGVHHHLKQL ISADNFFIAT LDVNSGAISV PFFADEKDAH PSQLYPEQSL STLLQQGLTG YVFRTGQTLL CDESKVDELV NAEEIVNLGS PCHLWLGVPI KHEDIVTAVL VVQTYDTNVS YGDIEVELMT FICHHITGVM ERLKHQEQLE QAIQQRTKEL SQAYDKLKQE VYERRRAERL QKSLFEIAEL ASSGSDNPVF YTQLHNVIRH LIPANNCYIA LLNEESTHLT FPFYVSQIEN QHPGARPLQD GLTEYMLKHK RPLLLDQNDI NNLIAAKEIY AKAPTLNHTQ TMHQWIGIPL FIHDEVRGAL TIYSFSMTQN YQTKDLELLT FVSQHIGAAI EKKLAAESLR RSYEELEEKV AARTTALAEL NKDLEKEIRQ RRNMEAKLVH DAKHDALTGL PNRAMFMERL NHAIKHVRRH SLEQFALLFI DLDRFKLIND TMGHLEGDRF LIETATRLRS CIRSNDTLAR LGGDEFVILL DTINDMNDAR DVAERVIRKI SQSYHFGTIE FHSGASIGIT ISGNKLDTSE SMLRNADTAM YQAKANGKGC YVIFDDSASQ QKMQDIAFEN DFRQALQADE LQLNFLPIVD LQTRQTRSLE CRLSWEHPQW GSIPQEVLNK LAEQANLQVE LDKYAIRLLD KCYHQLLISH GDNLDLHLML SSQHLKHKHV LRGLKTTLKQ TQLPLSQLWL FFNEKALVQE TENHISGFEL LNKLGVNLGI SHYGSGHSPL NSLLFLPLKG LKLDANITKQ LQDEQHIKLM SAYQKAASTL ELQTFVDGLQ SPEQINIFHA LGYRFGQGCA LASPFALVET QQLVCA
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