Gene SO_4324 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_4324 
Symbol 
ID1171929 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand
Start bp4512635 
End bp4515265 
Gene Length2631 bp 
Protein Length876 aa 
Translation table11 
GC content44% 
IMG OID637346054 
ProductGGDEF domain-containing protein 
Protein accessionNP_719849 
Protein GI24375806 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTTAGGG ATGAAGATGA GACTACCCCA CCTCGAGCTC GTGAGGTTGA GCGCTTAAAA 
AAGAGACTTT ATCGCCTTAA ATATTTGGCA CATAAGTACA AGCGTGCGGA AGTGGTTCAA
AATGCGTTAC TCGAATTGTC CCATATTGCC ACTCAGGTTT CCTCGCTGGA GGAATTTTAC
TTAGGGGTTC ACCACCATCT AAAACAGCTT ATCTCCGCGG ATAATTTTTT TATCGCGACT
CTCGATGTGA ATAGCGGTGC CATTTCAGTT CCCTTCTTTG CGGATGAGAA AGACGCGCAT
CCTTCCCAAC TTTATCCAGA GCAGTCACTA TCAACACTGT TACAGCAAGG GTTAACAGGT
TATGTATTTC GCACGGGACA AACCCTATTG TGCGATGAAT CTAAAGTTGA TGAGCTAGTC
AACGCAGAAG AGATTGTCAA CCTAGGTTCT CCTTGTCACC TTTGGCTGGG AGTGCCCATT
AAGCATGAAG ACATAGTCAC TGCGGTACTT GTAGTGCAAA CCTATGATAC CAATGTGAGT
TATGGCGATA TCGAAGTCGA GTTAATGACC TTTATTTGCC ACCATATTAC TGGCGTGATG
GAAAGGCTTA AGCATCAAGA ACAATTAGAG CAAGCTATAC AACAACGTAC TAAAGAGCTT
AGCCAAGCCT ACGATAAGCT TAAGCAAGAA GTGTATGAGA GGCGCAGAGC TGAGCGACTC
CAAAAATCCT TATTTGAAAT TGCAGAACTA GCAAGCTCTG GTTCGGATAA TCCAGTGTTT
TACACTCAGC TACATAATGT AATCCGTCAT CTGATCCCAG CCAATAACTG CTACATTGCC
CTGTTAAATG AGGAAAGTAC CCACTTAACC TTCCCGTTTT ATGTCTCCCA AATAGAAAAT
CAACACCCTG GGGCTCGGCC ATTACAGGAT GGGCTCACAG AGTATATGCT CAAACACAAG
CGCCCCCTGC TACTAGACCA AAATGATATT AATAACCTGA TTGCCGCAAA AGAAATTTAC
GCTAAGGCGC CGACGCTTAA TCACACCCAA ACGATGCATC AATGGATTGG CATCCCGTTG
TTTATCCATG ATGAAGTACG CGGCGCGCTA ACCATTTATA GCTTTAGCAT GACTCAAAAC
TACCAAACGA AAGATTTGGA GTTACTTACC TTTGTATCAC AGCATATTGG GGCTGCGATC
GAGAAAAAAC TCGCCGCGGA GTCATTACGC CGTAGTTATG AAGAGCTAGA AGAAAAAGTG
GCTGCTCGGA CAACAGCCCT TGCTGAACTC AATAAAGATC TAGAGAAAGA GATCCGCCAG
CGCCGCAATA TGGAAGCAAA ACTCGTCCAT GATGCTAAAC ACGATGCGCT AACCGGACTG
CCCAATCGCG CCATGTTTAT GGAGCGACTT AATCACGCTA TTAAACACGT TCGCCGCCAT
AGCCTAGAGC AGTTTGCCCT GTTGTTTATC GATCTTGACC GCTTTAAGCT CATTAACGAC
ACCATGGGAC ATTTAGAGGG CGATAGGTTT TTAATTGAAA CAGCCACTCG CTTACGTTCC
TGTATCCGCA GTAACGATAC TCTAGCCAGA CTCGGTGGTG ATGAGTTTGT CATCCTGCTC
GATACCATCA ACGACATGAA CGATGCGCGT GATGTTGCCG AACGGGTTAT CCGAAAAATC
TCCCAGTCCT ATCATTTTGG GACGATCGAG TTCCATTCGG GTGCCAGCAT CGGGATTACT
ATCAGTGGTA ATAAGTTGGA TACCAGTGAG TCAATGTTAC GCAATGCCGA CACAGCGATG
TACCAAGCCA AGGCAAATGG TAAAGGTTGT TATGTGATTT TTGACGATAG TGCCTCACAG
CAAAAAATGC AGGATATTGC TTTCGAGAAT GATTTTAGAC AGGCACTGCA AGCGGATGAG
TTACAGCTCA ACTTCCTGCC GATTGTCGAT TTACAAACCA GACAAACCCG TTCCTTAGAA
TGTCGATTAA GCTGGGAGCA CCCCCAATGG GGAAGTATCC CACAGGAAGT CCTGAACAAA
TTAGCCGAGC AAGCAAACTT ACAAGTTGAG CTGGATAAGT ATGCGATTCG CTTATTGGAT
AAGTGTTATC ACCAACTATT GATAAGCCAT GGAGATAACC TTGATTTACA TCTTATGCTT
TCCAGTCAAC ACCTTAAGCA TAAGCATGTA CTACGTGGGC TTAAAACCAC CCTAAAGCAA
ACTCAGCTTC CTCTCTCTCA GTTATGGTTA TTTTTTAATG AAAAAGCCTT GGTTCAAGAA
ACGGAGAATC ACATTAGCGG CTTTGAATTA TTAAATAAAC TGGGCGTGAA CTTAGGGATT
AGCCACTACG GAAGCGGTCA TAGTCCGTTA AATAGTTTGT TGTTTCTGCC ATTAAAAGGC
CTCAAGCTTG ATGCGAATAT CACTAAACAA TTACAGGATG AACAACATAT TAAGCTAATG
TCGGCCTATC AAAAGGCGGC CTCAACCTTG GAGTTACAAA CCTTTGTCGA CGGGCTGCAA
TCCCCTGAGC AAATCAATAT ATTTCATGCG CTAGGTTACC GCTTTGGCCA AGGTTGTGCC
TTAGCCTCTC CTTTTGCCTT AGTGGAAACG CAGCAACTGG TTTGCGCATA A
 
Protein sequence
MFRDEDETTP PRAREVERLK KRLYRLKYLA HKYKRAEVVQ NALLELSHIA TQVSSLEEFY 
LGVHHHLKQL ISADNFFIAT LDVNSGAISV PFFADEKDAH PSQLYPEQSL STLLQQGLTG
YVFRTGQTLL CDESKVDELV NAEEIVNLGS PCHLWLGVPI KHEDIVTAVL VVQTYDTNVS
YGDIEVELMT FICHHITGVM ERLKHQEQLE QAIQQRTKEL SQAYDKLKQE VYERRRAERL
QKSLFEIAEL ASSGSDNPVF YTQLHNVIRH LIPANNCYIA LLNEESTHLT FPFYVSQIEN
QHPGARPLQD GLTEYMLKHK RPLLLDQNDI NNLIAAKEIY AKAPTLNHTQ TMHQWIGIPL
FIHDEVRGAL TIYSFSMTQN YQTKDLELLT FVSQHIGAAI EKKLAAESLR RSYEELEEKV
AARTTALAEL NKDLEKEIRQ RRNMEAKLVH DAKHDALTGL PNRAMFMERL NHAIKHVRRH
SLEQFALLFI DLDRFKLIND TMGHLEGDRF LIETATRLRS CIRSNDTLAR LGGDEFVILL
DTINDMNDAR DVAERVIRKI SQSYHFGTIE FHSGASIGIT ISGNKLDTSE SMLRNADTAM
YQAKANGKGC YVIFDDSASQ QKMQDIAFEN DFRQALQADE LQLNFLPIVD LQTRQTRSLE
CRLSWEHPQW GSIPQEVLNK LAEQANLQVE LDKYAIRLLD KCYHQLLISH GDNLDLHLML
SSQHLKHKHV LRGLKTTLKQ TQLPLSQLWL FFNEKALVQE TENHISGFEL LNKLGVNLGI
SHYGSGHSPL NSLLFLPLKG LKLDANITKQ LQDEQHIKLM SAYQKAASTL ELQTFVDGLQ
SPEQINIFHA LGYRFGQGCA LASPFALVET QQLVCA