Gene SO_4313 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_4313 
SymbolhemC 
ID1171918 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand
Start bp4490624 
End bp4491556 
Gene Length933 bp 
Protein Length310 aa 
Translation table11 
GC content51% 
IMG OID637346039 
Productporphobilinogen deaminase 
Protein accessionNP_719838 
Protein GI24375795 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0181] Porphobilinogen deaminase 
TIGRFAM ID[TIGR00212] porphobilinogen deaminase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTGAAA ACCGCATACG TATCGCTACC CGCAAGAGTC CGCTGGCCAT GTGGCAAGCA 
GAATTTGTTA AAGCAGAATT AGAACGCATT CACCCTGGTA TTGTGGTGGA GCTATTGCCA
ATGAGCACTA AGGGCGATGT TATCTTAGAC ACGCCATTAG CTAAAGTCGG TGGCAAAGGC
TTGTTCGTTA AAGAACTCGA AGTCGCCATG CTGGAAGATC AAGCCGACAT CGCGGTGCAC
TCAATGAAAG ACGTGCCTGT AGATTTCCCC GAAGGATTAG GACTGGAAGT CATTTGTGAG
CGTGAAGATC CTCGCGATGC TTTTGTCTCC AATATTTATA AGTCGATCAG TGAGTTGCCA
CTTGGTGCCA CGGTTGGTAC TTCTAGCCTG CGCCGTCAGT GCCAACTGCG TGCTTCCCGT
CCCGATCTTA TCATCAAAGA TCTGCGTGGC AACGTAGGTA CTCGCCTCGC GAAACTCGAT
AACGGTGAAT ACGATGCGAT TATTCTTGCC GCGGCAGGCT TAATCCGCCT GAAGTTATCT
GAGCGTATCG CCAGCTTTAT CTCTGCCGAA GAGTCCTTAC CCGCAAACGG TCAAGGTGCT
GTCGGTATCG AATGTCGCAC CAATGATGAG CGCGTTAAAG CATTATTAGC GCCATTAGAA
CACTTAGAGA CACGCTACCG CGTGATCGCC GAGCGCGCGA TGAATACTCG CCTTGAAGGT
GGTTGCCAAG TCCCTATTGG CGCCTTTGCC GAAATTGATG GTGATGAGAT GACACTGCGC
GGATTAGTGG GTAACCCAGA TGGCAGTGAA ATCATCGAAG GCGTGATCAC CGGTCCTAAG
ACCGAAGCCA CGCAATTAGG TGTTGCCCTT GCGGAAGAAC TACTCAGCAA AGGCGCCAAA
AGCATCCTCG ATGCTGTTTA CGCCAAAGCC TAA
 
Protein sequence
MSENRIRIAT RKSPLAMWQA EFVKAELERI HPGIVVELLP MSTKGDVILD TPLAKVGGKG 
LFVKELEVAM LEDQADIAVH SMKDVPVDFP EGLGLEVICE REDPRDAFVS NIYKSISELP
LGATVGTSSL RRQCQLRASR PDLIIKDLRG NVGTRLAKLD NGEYDAIILA AAGLIRLKLS
ERIASFISAE ESLPANGQGA VGIECRTNDE RVKALLAPLE HLETRYRVIA ERAMNTRLEG
GCQVPIGAFA EIDGDEMTLR GLVGNPDGSE IIEGVITGPK TEATQLGVAL AEELLSKGAK
SILDAVYAKA