| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_4112 |
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| Symbol | mshL |
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| ID | 1171725 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 4270814 |
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| End bp | 4272496 |
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| Gene Length | 1683 bp |
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| Protein Length | 560 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637345845 |
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| Product | MSHA biogenesis protein MshL |
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| Protein accession | NP_719642 |
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| Protein GI | 24375599 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02519] pilus (MSHA type) biogenesis protein MshL |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAGCCA TTAAATACTT CACACCTCTA CTCTCACTTT GCCTTATGGC TTGCCAAACA
ACGGATAGGC CGCAACCTAC GGCTTCAAAA GAAGCGCTTT CCGCCTCGAT GCAGACCGCG
AGCCAGCCAA CGCCGCCCCC GCCAGCCACT ATGCCAGATG CGGTGCAGCG TGAGCTGAAT
GCCAATACTT TAATGGGTGG CTTAACTGCT CCCATGGAGA CTGAGCGTCG TATCGATGTC
TCTGCCCATG ATGTGGATGC GAGGGTGTTT TTCCCTAGTC TCGTGCAGGG CACTCCCTTT
AGTGTGGCGG TGCACCCTGA TGTGCAGGGC ACTATTTCAT TATCGCTAAA AGGGGTGACA
CTAAGCGAAG CCATTCAAGT GGTGGAAGAT ATTTATGGTT ATGAAGTCAG CCGTGAAGGA
CGTATTTTGC GGGTATTCCC TGCGGGGATG CGTACTGAGA CTTTCCCTTT AAATTACTTA
TACATGGAGC GTGATGGCCT GTCGTTAACC TCGGTAAGTT CGGGCCGAAT TTCCGATAAT
AACAACTCAA ATAACAATAA CGGCAATAGT AACTCGAATA ACGGCAACTC AGGTGGAAAT
AATAGCAATA GCAATTCGAG CAACGGCAGT AATGCTAGCA GTAACAGCAG CGATAGCACC
AATGGCACCT TTATTCGCTC GCGTACCAAA ACCGATTTTT GGGGCGAGTT AAAAGAAACC
TTAACCGCCA TTGTGGGTGA CACGGGCGGC GGCCGCCAAG TGGTGGTGAC TCCGCAGGCG
GGATTAGTGA CTATTCGTGC TTATCCAAAT GAGCTGCGCC AAGTGCGTGC ATTTTTAAGT
TCGGCCGAGA GCCATTTACA GCGCCAAGTG ATCCTCGAAG CGAAAATCCT CGAAGTGACC
CTTTCTGACG GTTATCAGCA GGGTATTCAG TGGGATAATG TGCTGGGTCA TGTAGGCAAC
ACCAATATTA ATTTTGGGAC ATCAGCGGGT ACTGGCTTAA GCGATAAAAT CACCTCCTCA
CTGGGTGGGG TGACATCGTT GAGCATTAAA GGCTCAGATT TTAATACCAT GATAAGCCTG
CTCGATACCC AAGGTGATGT GGATGTATTA TCCAGCCCAA GGGTGACGGC ATCTAACAAT
CAAAAAGCGG TGATTAAAGT CGGTACCGAT GAGTATTTTG TTACCGATGT TTCATCGACC
ACGGTTGCTG GTACGACACC TGTCACTACA CCTCAGGTGG AATTGACTCC ATTTTTCTCA
GGCATCGCGC TGGATGTCAC TCCGCAAATC GATAAAGACG GCAACGTATT ACTGCATGTT
CACCCATCGG TTATTGATGT AAAAGAACAA ACGAAGGACA TCAAAGTCAG CAATGAATCC
TTAGAATTAC CTTTGGCACA AAGTGAAATC CGCGAGTCTG ATACCGTCAT CCGCGCGGCC
TCTGGCGATG TGGTGGTGAT TGGCGGACTG ATGAAGAGTG AAAATATTGA GGTGGTGTCC
CAAGTGCCGC TGCTTGGTGA TATTCCGTTC GTGGGCGAAC TGTTTAAAAA CCGTAGCAAG
CAGAAAAAGA AAACCGAGTT AATTATTATG CTTAAGCCTA CCGTGGTGGG TAATGATACT
TGGAAAACTG AGTTAGAGCG CTCTAAGACG TTGCTCGACC GTTGGTATCC AGAAAATAAG
TAA
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| Protein sequence | MTAIKYFTPL LSLCLMACQT TDRPQPTASK EALSASMQTA SQPTPPPPAT MPDAVQRELN
ANTLMGGLTA PMETERRIDV SAHDVDARVF FPSLVQGTPF SVAVHPDVQG TISLSLKGVT
LSEAIQVVED IYGYEVSREG RILRVFPAGM RTETFPLNYL YMERDGLSLT SVSSGRISDN
NNSNNNNGNS NSNNGNSGGN NSNSNSSNGS NASSNSSDST NGTFIRSRTK TDFWGELKET
LTAIVGDTGG GRQVVVTPQA GLVTIRAYPN ELRQVRAFLS SAESHLQRQV ILEAKILEVT
LSDGYQQGIQ WDNVLGHVGN TNINFGTSAG TGLSDKITSS LGGVTSLSIK GSDFNTMISL
LDTQGDVDVL SSPRVTASNN QKAVIKVGTD EYFVTDVSST TVAGTTPVTT PQVELTPFFS
GIALDVTPQI DKDGNVLLHV HPSVIDVKEQ TKDIKVSNES LELPLAQSEI RESDTVIRAA
SGDVVVIGGL MKSENIEVVS QVPLLGDIPF VGELFKNRSK QKKKTELIIM LKPTVVGNDT
WKTELERSKT LLDRWYPENK
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