| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_4109 |
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| Symbol | mshE |
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| ID | 1171722 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 4266832 |
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| End bp | 4268592 |
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| Gene Length | 1761 bp |
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| Protein Length | 586 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637345842 |
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| Product | MSHA biogenesis protein MshE |
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| Protein accession | NP_719639 |
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| Protein GI | 24375596 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACCCA GATTAAAGAT GCGTTTGGGC GATCTGTTAG TTCAAGAATC CATTATTACC
GAAGAGCAGT TGCAGCAGGC TTTGGGTGAG CAACGCAAGA CTGGCCATAA ACTCGGCCGA
ACATTGATCG ATCTGCGTTC GATTACCGAA ACTCAACTAC TGCAATTTTT GTCGCAGCAA
CTCAACCTGC CCTTACTCGA TATCAGTAAA CGTTCGATCC CCTCTGAGGT GGTCAATCTG
ATCCCTGAAG TACAAGCAAG GCGTTTTCGT GCCCTAGCGG TAGAAGATAG GGGCGATAGT
GTACTGGTTG CTATGAGCGA CCCTGCAGAT TTACAGGCGC TCGATCACTT AGAAACCATC
ATCGCGCCTA AAAAGCTCAG TGTCGCGGTC GCGCCTGAGC AGCAGTTACT GCAAGCCTTC
GATAACCTCT ATCGCCGCAC CGACCAGATC GCACAAATTG CTGGCAAGCT AGAAGAGGAA
TACGCCGCCG ATAAAATGTT TGATTTGGCA AGCTTAACTT CGAGCGACAG TGATAATGAA
ACCACTGTCG TTAAATTGCT CCAGTCTATC TTTGAAGATG CGGTGCAAAT GCGTGCCTCG
GATATTCATA TCGAACCTGG GGAAAAGGTG CTGCGGATCC GTCAGCGGAT CGATGGTCAG
TTACATGAGA CCATACTGAA TGAGGTTAAT ATCGCCGCAG CTTTGGTTCT GCGTCTTAAG
CTTATGGCGG GCCTCGATAT TTCTGAAAAA CGTCTGCCGC AGGACGGGCG TTTCCATATG
GAAATTAAGG GCCACAAAAT TGATGTGCGG ATGTCGACCA TGCCGATTTA CCACGGTGAA
TCCGTGGTAA TGCGTTTGCT CGATCAATCC GCAGGACTAC TGACCTTAAA CGAAACGGGT
ATGCCGCCGC ATATTTTGGC GCGTATTCGT AAGCAGATTA AACGTCCGCA CGGCATGTTA
CTGGTAACAG GCCCTACGGG TAGCGGTAAA ACCACCACCT TGTATGGCAT CTTAAGTGAG
CTCAATACCG CGGATCGCAA GATTATCACG GTAGAAGATC CGGTCGAATA CCAATTACCA
AGGATTAACC AAGTTCAAGT TAACCATAAG ATTGGACTTG ATTTTTCGAA CGTGCTGCGC
ACTACATTAC GTCAAGACCC AGACATCATC ATGGTCGGGG AGATGCGCGA CCAAGAAACC
GTTGAAATTG GCCTGAGGGG CGCACTTACG GGTCACTTTG TGTTATCCAC TTTGCACACC
AATGATGCGG TAACCAGCGC GCTGCGTTTG CTCGATATGG GCGCTGCCAG TTATTTAGTC
GCAAGTGCCT TAAGGGTGAT TATTGCCCAG CGATTAGTGC GCCGTGTATG CCATAACTGC
GGCGTAGAAC ATCAACCTAC TGCGCAGGAA AAAGCGTGGT TAAATAGCGT AAGCCGTCAA
GATTTTACCC ATGCGAATTT CCGTATTGGT ACGGGTTGTC AGAGCTGTAA TGGCAGTGGT
TATCGTGGCC GTATCGGTAT TTTTGAAATC CTCGAACTGG ATGAAAAAAT GATTGATGCC
ATGCGCACTG GCAATCCGCA GGATTTTGCC TGCGCAGCAC TACAAAGCCC GAACTTTACC
CCGTTAGCCG AATCGGCATT GCAATATTTA AGTGAGGGTA TGACGACCAT TGAAGAGGTG
GCTAAGCTGG TAGAGGATGT GAGTGAATCT CAAGTGCCAC TCTCACGGGA TATTATTAGT
CAACAAGGCG TCGAGGCCTA A
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| Protein sequence | MKPRLKMRLG DLLVQESIIT EEQLQQALGE QRKTGHKLGR TLIDLRSITE TQLLQFLSQQ
LNLPLLDISK RSIPSEVVNL IPEVQARRFR ALAVEDRGDS VLVAMSDPAD LQALDHLETI
IAPKKLSVAV APEQQLLQAF DNLYRRTDQI AQIAGKLEEE YAADKMFDLA SLTSSDSDNE
TTVVKLLQSI FEDAVQMRAS DIHIEPGEKV LRIRQRIDGQ LHETILNEVN IAAALVLRLK
LMAGLDISEK RLPQDGRFHM EIKGHKIDVR MSTMPIYHGE SVVMRLLDQS AGLLTLNETG
MPPHILARIR KQIKRPHGML LVTGPTGSGK TTTLYGILSE LNTADRKIIT VEDPVEYQLP
RINQVQVNHK IGLDFSNVLR TTLRQDPDII MVGEMRDQET VEIGLRGALT GHFVLSTLHT
NDAVTSALRL LDMGAASYLV ASALRVIIAQ RLVRRVCHNC GVEHQPTAQE KAWLNSVSRQ
DFTHANFRIG TGCQSCNGSG YRGRIGIFEI LELDEKMIDA MRTGNPQDFA CAALQSPNFT
PLAESALQYL SEGMTTIEEV AKLVEDVSES QVPLSRDIIS QQGVEA
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