| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_4094 |
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| Symbol | cafA |
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| ID | 1171708 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 4252299 |
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| End bp | 4253765 |
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| Gene Length | 1467 bp |
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| Protein Length | 488 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637345828 |
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| Product | ribonuclease G |
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| Protein accession | NP_719624 |
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| Protein GI | 24375581 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGTTCAG AGTTACTTAT TAACGTAACC CCATCAGAGG CCCGTGTCGC TTTGGTTGAG
CACGGCGTGC TGCAAGAAGT CCATATTGAA CGCCGCATGA AGCGTGGCCT TGTGGGCAAT
ATTTACAAAG GTAAAATCAG CCGTGTGTTG CCCGGTATGC AAGCCGCCTT CGTGGATATT
GGTTTAGATA AAGCGGCCTT TTTACATGCC TCCGACATAG TGCCGCACAC CGAATGTGTC
GCCGATGTCG AGAAAGGCCA TTTTGTGGTC CGTGATATCG CAGAGCTGGT GCGCCAAGGG
CAAGATATTA TGGTGCAAGT GGTGAAAGAC CCGCTCGGCA CTAAAGGTGC ACGCCTGACC
ACGGACATTA CTCTGCCTTC CCGTTATTTG GTGTTTATGC CGGGCTCCAG CCATATAGGG
GTGTCCCAGC GGATTGAGCA GGAAGAAGAG CGCAGTCGTC TCAAAAAAAT CACTCTGCCT
TTCGTCGATG AAGACGGCGG CTTTATTATC CGCACCGCCG CCGAGGGCGT AGGTGAGGAT
GAGCTCGCGC AGGACGCCGC TTTTTTGCGT CGAGTCTGGT CTAAAGTCTC GGAGCGTCGT
CAGCGCCGTG GTGTTGCGTT ACTCTATCAA GATCTCGCTT TGCCTGTACG GATTGTGCGT
GACTTTGTTG GGACGGAATT AGATCGCATT CAAGTCGATT CGCGGCGCAC TTTTGCCGAG
CTGCAAGCCT TCGCTCAAGA GTTTATGCCG GAAATCGCCG ACAAGATTGA GCACTATTCT
GGCCCAGCGC CGATTTTCGA TCTCTACGAT GTTGAGAATG AAATCCAACG CGCCCTTGGA
CGCAAGGTAG AGCTCAAATC GGGTGGCTAT CTGATTATCG ATCAGACCGA AGCCATGACC
ACGGTCGATA TCAACACAGG TGCCTTTGTT GGCCACCGCA ATCTTGAAGA AACCATCTTT
AACACTAACC TCGAAGCTAC CCAAGCCATC GCGCGGCAAC TTAGGCTACG TAATCTCGGT
GGCATCATCA TTATCGACTT TATCGATATG CTGAGTGACG AGCATAAAAC CCGTGTACTC
AATAGCTTAA ACAGTGCGTT AGCCAAGGAC AGGGTTAAAA CCAATGTCAG TGCTTTCTCT
GGGTTAGGAT TAGTGGAAAT GACCCGCAAA CGCACCCGAG AGAGTTTAGA GCATGTGCTG
TGCGGCGAGT GCCCTGCGTG TAAGGGGACG GGGAGTATGA AAACAGTCGA AACAGTCTCT
TATGAAATAT TCCGTGAAAT TATCCGTTTG AATAGAGCCT ATGATGCTGA TGAGTTTTTG
CTGTACTGCT CGCCTGCTGT GTATAACAGC TTAAGTGGCG ATGAAAGTCA TCTAGTCGCT
GAGCTTGAGG TCTATATCGG TAAACGTATT CGTCTGCAAA ATGAGCCTAT GTATTCCCAG
CATAAATACG ACGTGGTGAT GATGTAG
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| Protein sequence | MGSELLINVT PSEARVALVE HGVLQEVHIE RRMKRGLVGN IYKGKISRVL PGMQAAFVDI
GLDKAAFLHA SDIVPHTECV ADVEKGHFVV RDIAELVRQG QDIMVQVVKD PLGTKGARLT
TDITLPSRYL VFMPGSSHIG VSQRIEQEEE RSRLKKITLP FVDEDGGFII RTAAEGVGED
ELAQDAAFLR RVWSKVSERR QRRGVALLYQ DLALPVRIVR DFVGTELDRI QVDSRRTFAE
LQAFAQEFMP EIADKIEHYS GPAPIFDLYD VENEIQRALG RKVELKSGGY LIIDQTEAMT
TVDINTGAFV GHRNLEETIF NTNLEATQAI ARQLRLRNLG GIIIIDFIDM LSDEHKTRVL
NSLNSALAKD RVKTNVSAFS GLGLVEMTRK RTRESLEHVL CGECPACKGT GSMKTVETVS
YEIFREIIRL NRAYDADEFL LYCSPAVYNS LSGDESHLVA ELEVYIGKRI RLQNEPMYSQ
HKYDVVMM
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