Gene SO_4043 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_4043 
Symbol 
ID1171668 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand+ 
Start bp4196803 
End bp4197912 
Gene Length1110 bp 
Protein Length369 aa 
Translation table11 
GC content45% 
IMG OID637345788 
ProductTonB domain-containing protein 
Protein accessionNP_719573 
Protein GI24375530 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0810] Periplasmic protein TonB, links inner and outer membranes 
TIGRFAM ID[TIGR01352] TonB family C-terminal domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTATATG GAAAAACATT ACCTTTAGCC AGTCTATTGG CCTTCACCTT AAGCACATCG 
TTACCCTTAA ACGCCTCGGA AAACAGCTTT TCCCAAGCCT ACAGTGACTA CCAAGCAGCC 
ATTAAACAGG GCGATAACGC GAAGATTGAA GCTAGCGCCA AAAGGGCCTT TGAATTGGGC 
GAAGCTCAAT ATACCAAGGA CAGTGTCGAC TTAGCGAACC TCGCCATGAA CTGGGCTGGT 
GTGATAGAGA AGCAAGTCGC CCCTTACCCG TTTGAAGAAA AGAATTTGCC AAAAACAGCT 
AAGGCGAATG AGTTATATCA ACTCGCATTA AGCAATTATA AAAAGCATTA CGGCGAGCAT 
GCAGCTGAGC TTATCGACCC GCTACTCGGC GCAGCAGAAA CGGCACCTAA GCTGGTTTTG 
GCTAAAGGGC TTTTAGATGA CACGCTGAAA ATTGCAGAAA AAACAAAAGA TAAAAAGCTG 
TTGGCTGATA TAAAAATGGC AGCCTTTGCT CGCCTCAGCA ACACAGAATT GTACACTGCT 
AAGGTAAGAG ACTATGCCTT CGATGCCTAT GAAACTTACA AAGAGATCCT GCCCGAAAAT 
GCCCTCGACA GAGTCAAAGC CACCTATGTA GTCGGTGCCG TTGAATATGC CGAAAAGCAT 
GATGACAAGG CAATTCCGTT GCTTTTAGAA GTGGTTAAGC AGTTTGACGC CCTTAACTTT 
AGCCATCCCT ATGCCTTAAG CGCCCATGCT TATCTAGTCG AACTGTATGA GCGCCAAGGA 
AAGCGTGACG AGTCCACCGC CCACTGTATC GCCATCGGCA AAATGCGACC TTGGGCTGAC 
ACGCAGGAGC AACAACCGCT GTTTCGTACC GCACCAGACT ATCCCATGTC CTATGCTCGG 
CAAGCTAAAA ATGGCTGGGT TCAGCTTAAA TTTACCGTTG ATGAACATGG CTTTGTGAAA 
AATACTGAAA TTTTAGCCTC TAAGGGTGGT GCTTTATTTG AAAAAGAGAG CATTGAAGCC 
TTAAATAAAT GGCGTTACGC ACCCAAATTT GAAAATGGTA AAGCCGTAGA GGCACAAACT 
AGCGTGCAAA TGGATTACAC CATAAATTAA
 
Protein sequence
MLYGKTLPLA SLLAFTLSTS LPLNASENSF SQAYSDYQAA IKQGDNAKIE ASAKRAFELG 
EAQYTKDSVD LANLAMNWAG VIEKQVAPYP FEEKNLPKTA KANELYQLAL SNYKKHYGEH 
AAELIDPLLG AAETAPKLVL AKGLLDDTLK IAEKTKDKKL LADIKMAAFA RLSNTELYTA 
KVRDYAFDAY ETYKEILPEN ALDRVKATYV VGAVEYAEKH DDKAIPLLLE VVKQFDALNF 
SHPYALSAHA YLVELYERQG KRDESTAHCI AIGKMRPWAD TQEQQPLFRT APDYPMSYAR 
QAKNGWVQLK FTVDEHGFVK NTEILASKGG ALFEKESIEA LNKWRYAPKF ENGKAVEAQT 
SVQMDYTIN