| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_4029 |
|---|
| Symbol | |
|---|
| ID | 1171656 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | - |
|---|
| Start bp | 4183245 |
|---|
| End bp | 4184612 |
|---|
| Gene Length | 1368 bp |
|---|
| Protein Length | 455 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637345776 |
|---|
| Product | transporter, putative |
|---|
| Protein accession | NP_719559 |
|---|
| Protein GI | 24375516 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGTAACA ACGGACTTTC AGGAACCGAG AAAAAAGTCG CGTTTTCTTT AGCCAGTGTA
TTTGGTTTAC GCATGATGGG CTTGTTTATG ATCATGCCCG TCTTTGCACT TTATGGTCAG
CATCTAGAAG GTTTTTCACC CCTTTGGGTG GGTATCGCCA TCGGTGCCTA TGGCTTAACT
CAGGCGGTTT TGCAGATCCC CATGGGGATT TTATCCGATA AATATGGTCG TAAGCCTGTC
ATTCTCGCTG GGTTAGTGGT GTTTGCTATC GGCAGTGTCA TTGCCGCCAA TGCTGAAACC
ATCTATGGCG TTGTATTTGG CCGGGCTGTA CAAGGAATGG GCGCGATTGC CGCAGCCGTA
TTAGCTCTTG CGGCGGACTT AACGCGGGAT GAGCAGCGCA CTAAAGTCAT GGCGATTATC
GGCATGTGTA TCGGGCTTTC TTTTGCGCTC TCATTGTTAA TGGGACCTAT CGTCGCGCAG
CATCTTGGGT TGACTGGATT ATTTTGGTTA ACGGCGTTAT TGGCGATTTT GGGAATGTTG
CTGATCCAGT TTTTAGTGCC TAATCCAATT ACTCAGGCAC CCAAAGGGGA TACTTTAGCG
ACTCCAGCAA AGCTCAAACG TATGTTTTTT GAGCCGCAAC TATTTAGGCT TAACGCAGGC
ATTTTTATTC TGCATTTAGT GTTAACCGCA GTGTTTGTGG CCTTGCCACT CGATTTAGTC
GATGCAGGTT TAGTCAAAGA AAAACACTGG ATGCTGTATT TCCCTGCGTT TGTGGGCGCT
TTCTTTTTGA TGGTGCCATT AATTATTATC GGGGTTAAGC GTAAGAATAC TAAAGCGATG
TTCCAAATTG CCTTAGTCAT TATGATGTTT GCTCTTGCGG CGATGGCGAT TTTCGCCAGC
AACCTTTGGG TATTGAGTGT GGCCGTGCTG CTGTTTTTTA CTGGTTTTAA CTACCTTGAG
GCTTCATTAC CGAGCTTAAT TGCCAAATTT TGCCCTGTCG GTGAAAAGGG CTCAGCGATG
GGCGTTTATT CAACTAGCCA ATTTTTAGGG GCTTTTTGTG GCGGCATGCT CGGTGGCGGT
GCGTTCCAAT TAGTCGGTGC CGTTGGGGTG TTTATTGTGG CGCTGGTACT GATGGGCATT
TGGTTATTAC TTACCTTGGG GATGAAAAAT CCTGTACTGC TTAAGAGTTA CACCCTAGAG
GCAGCGGTAA AAGATAAAAA CCAAGCCCGT GATATGGCGG CGCAGTTGTC GCAATTAATG
GGCGTGGTCG AAGCGATTGT GGTGCTCGAT GAGAAAGTCG CTTATCTCAA GGTTGACGAG
CATTTCGATT TAAGAGAAGC CCGAGCTGTG TTAGGCTCTG CTCAATAA
|
|---|
| Protein sequence | MGNNGLSGTE KKVAFSLASV FGLRMMGLFM IMPVFALYGQ HLEGFSPLWV GIAIGAYGLT
QAVLQIPMGI LSDKYGRKPV ILAGLVVFAI GSVIAANAET IYGVVFGRAV QGMGAIAAAV
LALAADLTRD EQRTKVMAII GMCIGLSFAL SLLMGPIVAQ HLGLTGLFWL TALLAILGML
LIQFLVPNPI TQAPKGDTLA TPAKLKRMFF EPQLFRLNAG IFILHLVLTA VFVALPLDLV
DAGLVKEKHW MLYFPAFVGA FFLMVPLIII GVKRKNTKAM FQIALVIMMF ALAAMAIFAS
NLWVLSVAVL LFFTGFNYLE ASLPSLIAKF CPVGEKGSAM GVYSTSQFLG AFCGGMLGGG
AFQLVGAVGV FIVALVLMGI WLLLTLGMKN PVLLKSYTLE AAVKDKNQAR DMAAQLSQLM
GVVEAIVVLD EKVAYLKVDE HFDLREARAV LGSAQ
|
|---|
| |