| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3980 |
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| Symbol | nrfA |
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| ID | 1171612 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 4116204 |
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| End bp | 4117607 |
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| Gene Length | 1404 bp |
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| Protein Length | 467 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637345732 |
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| Product | cytochrome c552 |
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| Protein accession | NP_719510 |
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| Protein GI | 24375467 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3303] Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit |
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| TIGRFAM ID | [TIGR03152] formate-dependent cytochrome c nitrite reductase, c552 subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGAAGA AGATGACAGG TAAGACTTTT GCATTAAGTG CATTGGTTGC CGCCAGCTTT
ATGGCTGCGG GGGCTATGGC GAGTGATAAA ACTGAGCCTC GCAACGAAGT TTATAAAGAT
AAATTTAAAA ATCAATACAA TAGCTGGCAT GACACCGCAA AGAGTGAAGA GCTTGTTGAT
GCGCTAGAGC AGGACCCTAA TATGGTTATC CTGTGGGCAG GCTATGCATT TGCCAAAGAT
TATAAAGCCC CTCGTGGCCA CATGTATGCC GTGACTGACG TACGTAATAC CTTGCGTACT
GGCGCGCCAA AAAATGCGGA AGATGGTCCA TTACCTATGG CTTGCTGGAG CTGTAAAAGT
CCTGACGTGC CTCGCTTAAT TGAAGAGCAA GGTGAAGACG GTTACTTCAA AGGTAAGTGG
GCGAAAGGTG GCCCAGAAGT GACTAACACT ATTGGCTGTA GCGATTGCCA CGAAAAAGGT
TCACCAAAAT TACGTATTTC TCGTCCTTAT GTTGACCGCG CATTAGATGC AATTGGTACT
CCATTTAGCA AAGCTTCTAA GCAAGACAAA GAGTCAATGG TATGCGCCCA GTGTCACGTT
GAATACTACT TTGAGAAAAA AGAAGATAAG AAAGGTTTCG TCAAATTCCC TTGGGATATG
GGCGTAACTG TAGATCAAAT GGAAGTTTAC TATGATGGCA TTGAGTTCTC TGATTGGACT
CACGCACTGT CTAAAACGCC AATGTTAAAA GCCCAGCATC CCGAGTATGA AACGTGGAAA
ATGGGTATCC ATGGTAAAAA TAATGTCAGT TGCGTTGACT GTCATATGCC TAAAGTGACT
AGCCCTGAAG GTAAGAAGTT TACTGACCAT AAAGTGGGTA ACCCATTTGA TCGTTTCGAA
GAAACCTGTG CAACTTGCCA CAGCCAAACC AAAGAGTTCT TAGTTGGCGT CACTAATGAG
CGCAAAGCTA AAGTGAAAGA AATGAAACTC AAAGCGGAAG AGCAATTAGT GAAAGCGCAC
TTCGAAGCGG CGAAAGCATG GGAATTAGGT GCCACTGAAG CCGAAATGAA GCCAATTCTG
ACTGATATCC GCCATGCTCA ATGGCGCTGG GATTTAGCCA TTGCCTCACA TGGCGTTGCA
GCTCATGCTC CAGAAGAAGC ACTACGCGTG TTGGGCACCT CTGTTAATAA AGCGGCCGAT
GCCCGTGTTA AGTTAGCACA GTTGTTAGCG AAAAAAGGCT TAACAGACCC TGTTGCCATC
CCTGATATTT CGACTAAAGC TAAGGCTCAA GCAGTACTCG GAATGGACAT GGAAAAGATG
AATGCAGAGA AAGAAGCATT CAAGAAAGAC ATGTTACCTA AGTGGGATGC TGAAGCGAAA
AAACGCGAAG CGACTTACAA GTAA
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| Protein sequence | MMKKMTGKTF ALSALVAASF MAAGAMASDK TEPRNEVYKD KFKNQYNSWH DTAKSEELVD
ALEQDPNMVI LWAGYAFAKD YKAPRGHMYA VTDVRNTLRT GAPKNAEDGP LPMACWSCKS
PDVPRLIEEQ GEDGYFKGKW AKGGPEVTNT IGCSDCHEKG SPKLRISRPY VDRALDAIGT
PFSKASKQDK ESMVCAQCHV EYYFEKKEDK KGFVKFPWDM GVTVDQMEVY YDGIEFSDWT
HALSKTPMLK AQHPEYETWK MGIHGKNNVS CVDCHMPKVT SPEGKKFTDH KVGNPFDRFE
ETCATCHSQT KEFLVGVTNE RKAKVKEMKL KAEEQLVKAH FEAAKAWELG ATEAEMKPIL
TDIRHAQWRW DLAIASHGVA AHAPEEALRV LGTSVNKAAD ARVKLAQLLA KKGLTDPVAI
PDISTKAKAQ AVLGMDMEKM NAEKEAFKKD MLPKWDAEAK KREATYK
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