Gene SO_3963 details

Gene Information

• Locus tag: SO_3963
• Symbol: ptsN
• ID: 1171599
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 4103897
• End bp: 4104340
• Gene Length: 444 bp
• Protein Length: 147 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 637345719
• Product: nitrogen regulatory IIA protein
• Protein accession: NP_719493
• Protein GI: 24375450
• COG category: [G] Carbohydrate transport and metabolism; [T] Signal transduction mechanisms
• COG ID: [COG1762] Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)
• TIGRFAM ID: [TIGR01419] PTS IIA-like nitrogen-regulatory protein PtsN

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAACTTC GTACCATACT GCGGCCGGAG TGCACAACCT GCGCCACTCC AGGCAGTAAG 
AAAAAGGTAC TGGAACTTAT CAGCGACTTA GCCGCTGCCC AGTACCCCAC CCTATCATCT 
CAAGCGATCT TCGAAAGCCT TGTGGCGCGC GAAAAGATGG GTAGCACAGG TATAGGTAAC 
GGTATCGCCA TTCCACATGG TCGATTAACC GATATAACAC AACCCATAGC GATATTGATA 
AAATGTGAGG AGCCGATAGC CTTTGATGCT ATCGATAAAC AACCTGTCGA TATTTTATTT 
GCGCTACTCG TGCCTGCCAA TCAATGTCAG CAGCACTTAA GCACCTTGTC CTGCATGGCT 
GAAAAGCTGA GCGACAAGCA AGTATTGAAA CAATTGCGTA AGACGCATGA TGAAACGGAA 
CTCTATCAGG TAATCATTGG ATGA 

 

Protein sequence

MELRTILRPE CTTCATPGSK KKVLELISDL AAAQYPTLSS QAIFESLVAR EKMGSTGIGN 
GIAIPHGRLT DITQPIAILI KCEEPIAFDA IDKQPVDILF ALLVPANQCQ QHLSTLSCMA 
EKLSDKQVLK QLRKTHDETE LYQVIIG