Gene SO_3956 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_3956 
Symbol 
ID1171592 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand+ 
Start bp4098645 
End bp4099622 
Gene Length978 bp 
Protein Length325 aa 
Translation table11 
GC content50% 
IMG OID637345712 
Productcarbohydrate isomerase KpsF/GutQ family protein 
Protein accessionNP_719486 
Protein GI24375443 
COG category[M] Cell wall/membrane/envelope biogenesis
[T] Signal transduction mechanisms 
COG ID[COG0794] Predicted sugar phosphate isomerase involved in capsule formation
[COG2905] Predicted signal-transduction protein containing cAMP-binding and CBS domains 
TIGRFAM ID[TIGR00393] KpsF/GutQ family protein 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTAGACC AATCACAATT GCGCCAATGG GGCTGTAAAG TCATCGATAT TGAAAAATCG 
GCCCTCGACA ACCTTTATCA GTACGTCGAT TCCGCTGAAT TCGCCCAAGC CTGTGAATTA 
ATTCTCAACT GTAGCGGCAA AGTCATCGTG ATGGGGATGG GGAAATCCGG CCATATTGGC 
AATAAAATCT CAGCCACCCT CGCCAGTACA GGCACTCCGG CCTTCTTTGT GCATCCAGGC 
GAAGCCAGCC ATGGCGACTT AGGCGTACTC TCTGACAACG ATATTATTCT CGCCATTTCG 
AACTCGGGCG AATCAAGTGA AATCCTCGCA CTGATGCCCG TTATCCAGCG TAAAGCCATT 
CCGGTGATAG CCATGACGGG CAAACCTGAG TCCACTATGG CACGTTTGGC CAAAATTCAT 
TTATGCATTG AAGTACCAGA AGAAGCCTGC CCGCTCGGGC TCGCCCCCAC GTCAAGCACC 
ACCGCAACCT TAGTGATGGG TGATGCGATG GCGATTGCAC TGCTGCAAGC TAAAGGCTTC 
ACCCGAGACG ATTTCGCTAT GTCTCACCCA GGCGGCGCCT TGGGTCGTAA ACTACTGTTA 
AAAGTCAGTA ATGTGATGCA CTGCGGCGAT GACTTACCGC TGGTCAAACA CGATATCTGC 
ATTACCGATG CCCTGTATGA AATCTCCAAA AAAGGCCTCG GCATGACCGC GATTATCGAT 
GAGCAAAACA AACTCGTGGG TATTTTTACC GATGGCGACT TACGCCGCGT CATCGATGCC 
CAAGTCAACC TGCGCACCAC ACCGATCGCC GATGTGATGA CGCGAAACTG TGTCACTATT 
ACTGAAAACG TATTAGCAGC GCAGGCGCTG CAAGTGATGG ACTCTAGAAA TATCAACGGC 
CTAATAGTGA TAGATAAAGA AAATCATCCT GTCGGCGCAC TCAATATGCT CGATATGGTT 
AAAGCGGGAG TCATTTAA
 
Protein sequence
MVDQSQLRQW GCKVIDIEKS ALDNLYQYVD SAEFAQACEL ILNCSGKVIV MGMGKSGHIG 
NKISATLAST GTPAFFVHPG EASHGDLGVL SDNDIILAIS NSGESSEILA LMPVIQRKAI 
PVIAMTGKPE STMARLAKIH LCIEVPEEAC PLGLAPTSST TATLVMGDAM AIALLQAKGF 
TRDDFAMSHP GGALGRKLLL KVSNVMHCGD DLPLVKHDIC ITDALYEISK KGLGMTAIID 
EQNKLVGIFT DGDLRRVIDA QVNLRTTPIA DVMTRNCVTI TENVLAAQAL QVMDSRNING 
LIVIDKENHP VGALNMLDMV KAGVI