| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3935 |
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| Symbol | vacB |
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| ID | 1171573 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | - |
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| Start bp | 4079522 |
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| End bp | 4081948 |
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| Gene Length | 2427 bp |
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| Protein Length | 808 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637345694 |
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| Product | ribonuclease R |
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| Protein accession | NP_719466 |
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| Protein GI | 24375423 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATAAAAG ACCCTCATTT TGAGCGTGAA CAGGATAAGT ACGAAAACCC TATCCCAAGT
CGTGAGTATA TTATCGAGTA CTTACGTTCT CAAAAATCAC CTATTACCCG TGACAGCATT
GCTGCTGCAT TACAGATCCA TGATGAAGAG CAGTTAGAAG CTCTGCGTCG TCGTTTACGG
GCGATGGAGC GCGATGGTGA ATTGGTGTTT ACCCGCGGTC AAAGCTACGG CTTACCTGAA
AAAATGGATC TGATTTCTGG CACAGTGCTG GGTCATAAAG AAGGCTATGG CTTCTTTAAA
CCTGACGAAG GTGGCGACGA TTTATTTATC TCCAACCGTG ATATGTTGAT GTATTTCCAC
GGCGATAAAG TATTGGCGCA GAAGGTCGGA ATGGACCGTA AAGGTCGTCG TGAAGCCCGT
ATCGTGCGAC TTATTCAGCC TCGAAGTGCT GCGATTGTTG GCCGATTCCA TGTCGATAGC
GGCATGGCAT TTGTGATTGC CGATGATAAA CGCATTACCC AAGAAATCTT AATTGCAAGC
GAAGATCGCA ATGGCGCCCG TCAAGGCGAT GTGGTGGTGG TGGAATTAAC CCGCCGTCCC
GGTCGATTCG TTAAAGCCGC AGGTAAAGTG ACCGAAGTGC TCGGCAAACA AATGGCGCCT
GGAATGGAAA TCGAAATTGC CCTGCGTAAT TACGATCTTC CCCATACGTG GTCGGCTGCA
ATTGAAAAGA AACTGCGCCG TATTCCCGAT GAAGTGACTG AGTCTGATAA AGTCGGTCGT
GTCGATCTGC GCAGTCTGCC TTTAGTGACG ATTGATGGTG AAGATGCCCG CGACTTTGAC
GATGCGGTAT ATGCCGAAGT CAAGCCTAGT GGTGGCTGGC GTCTGTGGGT GGCGATTGCG
GATGTTAGTT ACTATGTACG CACCGATTCA GCCTTAGATA CCGAAGCACG CGCCCGTGGT
AACTCGGTGT ACTTCCCGTC GCAAGTGATC CCAATGCTGC CGGAGAAGAT CTCTAACGGC
TTGTGTTCAC TCAATCCCCA TGTAGACCGC CTCTGTATGG TTGCTGAAAT GACGATTTCA
GCCCGTGGTA AGCTGTCGGG TTATAAATTT TATCCGGCGG TGATGCATTC ACACGCGCGT
TTTACTTACA CCCAAGTTGC AGCCATGCTC GAAGGCGGGC CGATTGCGCC TGAACATGAA
GCACTCTTTG TGCATCTTCA ATGCTTACAG TCGCTTTATT TAGCGCTTGA TGAACAGCGC
GCCGAGCGCG GTGCGATAGC ATTTGAGACG ATAGAAACGC AGTTTATTTT TAACGACCAG
CGCAAGATCG ATAAGATTGT GCCAAGAGCT CGAAATCAAG CTCATAAAAT CATTGAAGAA
TGTATGATTT TGGCCAACGT ATCGGCTGCT AAGTTTGTGA AAAAGCATAA GGGTGAAATC
CTTTATCGAG TGCATGAGTC GCCCTCAGAG CAAAAACTGG CTAACTTTAA AGAGTTTTTG
GCCGAGCGCG GCTTAAGCAT GGGCGGTGGA CTTGAGCCGA CGCCGGCGGA TTACCAAAAT
GTGATGTTGC AGATTGCCGA TCGCCCCGAT GCTGAACTCA TTCAAGTGAT GTTGCTGCGA
TCAATGCGCC AAGCTATCTA CACGCCTGAT AATGAAGGCC ATTTTGGTTT AGCACTGGAA
GAATACGCAC ATTTTACCTC GCCAATTCGC CGTTATCCGG ATTTGGTGCT TCACCGTGTT
ATCCGCTATT TGTTGGCGAA GGAAAAGGGC GAAGCCAATG AAAAATGGAC TCCAGATGGT
GGCTACCACT ATCAACTCGA TGAGTTAGAC CAATTAGGCG AAGAATGTTC TACTACTGAG
CGCCGCGCCG ACGAGGCTAC CCGTGATGTA AGTGACTGGC TGAAATGTGA ATTTATGCAG
GACCATGTGG GTGACACCTT TGAGGCCGTG ATTGCCTCTG TCACTAACTT TGGTTTATTC
GTTCGCTTAA ATGACTTATT TATCGATGGC TTAGTGCATA TTTCTAGCCT TGGCAGCGAT
TATTATCAAT TTGATCCTAT GCGTCAGCGT TTGATTGGCG AGCATACCGG ACAAGTCTAT
CAGGTGGGCG ACCCCGTCAC GGTTAAAGTG GCCGCGGTAA ACTTGGATGA TAGACAGATA
GACTTAATGA TGCTCGGCGA TAGTGGCAAA GGTGGACGCC GCAAGGCTGC GCCGAGTCGT
GATAAACCTA TGACGGCCCG TGAGCGTGTT AATCGCGAAG GTGCGAAAAT GGCCAAAACG
GCTAAATCGT CTGGGGCTAA GTCTAAAGCG GGTTCAGGAA AAGCGGCGAG CAAGTCCAAG
TCAAAAGCGG GCACTAAGCC TAAGAAAAGC GTAAAAGATA CGGCGAAAAA GCCAAAGGCC
GCGAAGCGGA GCACGAGAAA GAAGTAA
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| Protein sequence | MIKDPHFERE QDKYENPIPS REYIIEYLRS QKSPITRDSI AAALQIHDEE QLEALRRRLR
AMERDGELVF TRGQSYGLPE KMDLISGTVL GHKEGYGFFK PDEGGDDLFI SNRDMLMYFH
GDKVLAQKVG MDRKGRREAR IVRLIQPRSA AIVGRFHVDS GMAFVIADDK RITQEILIAS
EDRNGARQGD VVVVELTRRP GRFVKAAGKV TEVLGKQMAP GMEIEIALRN YDLPHTWSAA
IEKKLRRIPD EVTESDKVGR VDLRSLPLVT IDGEDARDFD DAVYAEVKPS GGWRLWVAIA
DVSYYVRTDS ALDTEARARG NSVYFPSQVI PMLPEKISNG LCSLNPHVDR LCMVAEMTIS
ARGKLSGYKF YPAVMHSHAR FTYTQVAAML EGGPIAPEHE ALFVHLQCLQ SLYLALDEQR
AERGAIAFET IETQFIFNDQ RKIDKIVPRA RNQAHKIIEE CMILANVSAA KFVKKHKGEI
LYRVHESPSE QKLANFKEFL AERGLSMGGG LEPTPADYQN VMLQIADRPD AELIQVMLLR
SMRQAIYTPD NEGHFGLALE EYAHFTSPIR RYPDLVLHRV IRYLLAKEKG EANEKWTPDG
GYHYQLDELD QLGEECSTTE RRADEATRDV SDWLKCEFMQ DHVGDTFEAV IASVTNFGLF
VRLNDLFIDG LVHISSLGSD YYQFDPMRQR LIGEHTGQVY QVGDPVTVKV AAVNLDDRQI
DLMMLGDSGK GGRRKAAPSR DKPMTARERV NREGAKMAKT AKSSGAKSKA GSGKAASKSK
SKAGTKPKKS VKDTAKKPKA AKRSTRKK
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