Gene SO_3884 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_3884 
Symbol 
ID1171527 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand+ 
Start bp4030637 
End bp4031569 
Gene Length933 bp 
Protein Length310 aa 
Translation table11 
GC content51% 
IMG OID637345647 
Productphage integrase family site specific recombinase 
Protein accessionNP_719415 
Protein GI24375372 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTACAG CGACTGCTTA TGCGCTCTAT TTGAGCCGTC TTGCGCCCAA CAGTCAGCGC 
TCGATTGCTT CGCAGATGCG CAGCATTGCA CAGCTGATGG ACTGGCCTGA CGAAGTGATA 
GGCAAGCAAC TCAGCAGCAT TAACTATCAA CAAGCGATGC AGATACGGGC ATTGCTGATA 
CACGAGCAGT GGTCGGCACG CTCGATTAAC CGTGCGATGA CCGCGATTAA GAGTATTGTC 
AAAGTCGCCG CTTTGATGGG TGAAGCGGAT ATGCAGCAAG TCGCGCACAT CAACAGCATC 
GCTAACATGA AACACGGTGC CCATCAGGGT AATCCCCTGA GTGCAGAGCA AGTCACTAAG 
CTGCTCGCCT TGCTTTCCAA ACGCCAAGAC ACGTATGGGC TTCGCACATT AGCTATCTTT 
GCGTTGTTCC TCGGAACGGG GTTACGCCGT AGTGAACTAG CGGCACTGAC ACTTGCCGAT 
TATGACAGTG CAACCTCAAC AATTAAGGTG GTTGCAGGTA AAGGCAACAA GAGCCGTATT 
CTGTTCTTAC CCGATTGGGT TGAACAGCAT GTCATCGCTT GGCTCAACGT GCGCAAGATG 
CAATTGGGGC CACTCATTTG CCACTGTCGC ACGACTGGCA TTATTGTCCA TTACCGCCCT 
GTGAGTCGGG ATGCACTCTA TCGGTTAGTC AAAGATAAAC TTGGAGATAT CGGCGTAGTA 
GGTGCATCAC CCCATGATTT GCGCCGCACC TTTATTACTC GGCTACTGGA GCAAAACGTC 
GATATCAACA CCGTGCGCCA AATGGCAGGC CATGCAGATA TCAGTACTAC CACCATTTAT 
GACAAGCGTG GTGATGCGTT TATGCGTGAA GCCGCTGCCA CCCTGAACTA TGTGTCAGCA 
CCGAACGAAC GGGGTGGGAA AACAAGATGC TAA
 
Protein sequence
MTTATAYALY LSRLAPNSQR SIASQMRSIA QLMDWPDEVI GKQLSSINYQ QAMQIRALLI 
HEQWSARSIN RAMTAIKSIV KVAALMGEAD MQQVAHINSI ANMKHGAHQG NPLSAEQVTK 
LLALLSKRQD TYGLRTLAIF ALFLGTGLRR SELAALTLAD YDSATSTIKV VAGKGNKSRI 
LFLPDWVEQH VIAWLNVRKM QLGPLICHCR TTGIIVHYRP VSRDALYRLV KDKLGDIGVV 
GASPHDLRRT FITRLLEQNV DINTVRQMAG HADISTTTIY DKRGDAFMRE AAATLNYVSA 
PNERGGKTRC