| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3855 |
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| Symbol | sfcA |
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| ID | 1171498 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 4000788 |
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| End bp | 4002476 |
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| Gene Length | 1689 bp |
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| Protein Length | 562 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637345619 |
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| Product | malate dehydrogenase |
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| Protein accession | NP_719387 |
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| Protein GI | 24375344 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0281] Malic enzyme |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACGATA ATAAACGCCC CCTCTATCTT CCGTTTGCAG GACCTGCCAT TCTTGAAGCG
CCATTGATTA ACAAGGGCAG TGCATTTTCT GAAGAAGAGC GAATTTTCTT TAACCTCGAA
GGCTTAGTGC CCTATGCCAT TGAAACTATT GAAGAACAGG CTTCGCGCGC CTACGATCAG
TTTAGAAGTT TCAATAACGA TCTCGATAAG CACATTTATC TGCGCAACAT TCAAGACACC
AACGAGACGC TGTTTTATCG TTTAGTGCAA AATCATATCA GCGAAATGAT GCCAATTATC
TACACCCCTA CAGTAGGTTT GGCCTGTGAG CGTTTCTCGA AAAACTATCG CCGTAACCGT
GGTCTGTTCA TCTCTTATCC GAATAAAGAC AGGATTGATG ACATTCTCAA CAACTCAACG
CGCCAAAAGG TAAAAATCAT CGTGGTGACC GACGGTGAGC GCATCTTAGG CTTAGGCGAC
CAAGGTATTG GTGGCATGGG GATCCCGATT GGTAAATTGT CGCTCTACAC TAGCTGCGGT
GGGATCAGTC CCGCGTACAC ACTCCCTATC ACCTTAGACG TAGGTACCGA CAATCCACAA
TTGTTAGAAG ATCCTATGTA CATGGGTTGG CGCCATCCAC GTATTGGCGG CGAAGAATAT
GCCGAATTTA TCGAAGCCTT TATGCAAGCC GTGCATGTAC GTTGGCCAGA TACCCTGATC
CAATTCGAAG ACTTTGCCCA AAAAAATGCG ATGCCAATCC TTGAGCGTTA TAAGGAACGC
TACTGCTGCT TTAACGATGA TATTCAAGGT ACTGCCGCGG TGACTGTGGG CTCGTTACTC
GCCGCCTGTA AAGCCGCGGG TACTGAGCTT AACAAACAGC GTGTCGCCTT CTTAGGTGCG
GGTAGCGCAG GCTGCGGTAT TGCCGAAGCC ATTGTGGCGC AAATGGTGTC AGAGGGAATT
AGCGATGAGC AAGCCCGCAG CCAAGTTTGT ATGGTTGACC GTTGGGGCCT GTTGCTCGAT
AACATGCCAA ACCTGTTGCC ATTCCAGCAA AAACTGGCAC AAAAATGCGC AGATATTAGT
CATTGGAATA ACTTCAGCGA CAATATTTCG CTGCTCGATG TTGTCAACAA CGCTAAACCT
ACAGTGTTGA TTGGCGTATC GGGCGCTCCA GGCCTATTTA CCGAAGAAAT TGTGCGCGCA
ATGCATAGCC ACTGTCCGCG GCCGATTATC TTCCCACTGT CGAACCCAAC AAGCCGCGTT
GAAGCGACGC CAAAAGACAT TCTGCATTGG ACTTCGGGCC AAGCATTAGT CGCCACCGGT
AGCCCGTTCG AGCCTGTGGT TGTTGATGGT GAAACCTATG AAATCGCCCA GTGTAATAAC
AGCTTTATCT TCCCAGGCAT TGGTTTAGGC GTACTCGCCT CGGGTGCCCG TCACGTATCA
GATGCAATGC TCATGGCGTC GAGCCGCGCA CTTGCCGAAT GCTCGCCTTT GGCGATTAAT
GGCTCAGGGC CACTCCTGCC AAAACTGGAA GATATTCACT CAGTGAGTAA GCATATTGCG
TTCGCCGTAG GTAAAGTGGC GATTGAACAG GGTTTATCCT TACCCGCGAG TGATGAGTTA
CTGATGCAAT CTATCGAAGA TAATTTCTGG AAACCAGAAT ACCGTCGCTA TAAGCGCACA
TCGTTCTAA
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| Protein sequence | MDDNKRPLYL PFAGPAILEA PLINKGSAFS EEERIFFNLE GLVPYAIETI EEQASRAYDQ
FRSFNNDLDK HIYLRNIQDT NETLFYRLVQ NHISEMMPII YTPTVGLACE RFSKNYRRNR
GLFISYPNKD RIDDILNNST RQKVKIIVVT DGERILGLGD QGIGGMGIPI GKLSLYTSCG
GISPAYTLPI TLDVGTDNPQ LLEDPMYMGW RHPRIGGEEY AEFIEAFMQA VHVRWPDTLI
QFEDFAQKNA MPILERYKER YCCFNDDIQG TAAVTVGSLL AACKAAGTEL NKQRVAFLGA
GSAGCGIAEA IVAQMVSEGI SDEQARSQVC MVDRWGLLLD NMPNLLPFQQ KLAQKCADIS
HWNNFSDNIS LLDVVNNAKP TVLIGVSGAP GLFTEEIVRA MHSHCPRPII FPLSNPTSRV
EATPKDILHW TSGQALVATG SPFEPVVVDG ETYEIAQCNN SFIFPGIGLG VLASGARHVS
DAMLMASSRA LAECSPLAIN GSGPLLPKLE DIHSVSKHIA FAVGKVAIEQ GLSLPASDEL
LMQSIEDNFW KPEYRRYKRT SF
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