Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_3833 |
Symbol | prfA |
ID | 1171478 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | - |
Start bp | 3982400 |
End bp | 3983491 |
Gene Length | 1092 bp |
Protein Length | 363 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 637345600 |
Product | peptide chain release factor 1 |
Protein accession | NP_719366 |
Protein GI | 24375323 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0216] Protein chain release factor A |
TIGRFAM ID | [TIGR00019] peptide chain release factor 1 |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGGAAT CCGTTATCCG CAAGCTGGAA GGCTTGCTCG AGCGCAACGA AGAAGTCTTA GCTTTGCTTG GCGATGCGTC GGTTATCGCC GATCAGGATC GTTTTCGTGC GTTATCCAAA GAATATTCCC AGTTAGAAGA AGTGGTTGCA GGCTTTAAAG CCTACCAGCA AGCACAGGCT GATCTCGAAT CTGCCAAGGA AATGCTGGAA GAAGATGACG CCGAAATGCG CGAAATGGCG CAGGAAGAAA TCAAGGCCGC TAAAGTAGAG CTTGAGCGTC TCGAAGCCGA GCTGCAAATT CTGTTACTGC CAAAAGATCC TAACGACGAC ACCAACGCCT TTATCGAAAT TCGCGCCGGT GCGGGTGGTG ACGAAGCGGC GATCTTTGCC GGCGACTTAT TCCGTATGTA TAGCCGTTAT GCTGAAGCCA ACCGTTGGCA GCTCGAGATT ATGAGTTCAA ACGAAGGTGA ACACGGCGGC TTTAAAGAAA TCATTGTTAA AGTCAGTGGT GAAGGTGCCT ACGGTAAACT CAAATTTGAA TCCGGTGGTC ACCGCGTTCA ACGTGTGCCT GAAACTGAAT CCCAAGGTCG TGTACACACT TCTGCTGTGA CTGTGGTAGT GATGCATGAA GTACCTGAAG CGGAAGCGAT TTCCATAAAT CCTGCCGATC TGAAGGTTGA TACTTTCCGC TCATCGGGCG CGGGTGGTCA GCACGTTAAC AAAACTGATT CTGCGATTCG TATTACCCAT ATTCCGACAG GGATTGTGGT GGAATGCCAA GATCAACGCT CGCAACATAA AAACCGCGCC CAAGCGATGA GCGTGTTAGC GGCGCGTATC CAAGCCGTTG AAGATGAAAA ACGCCGCAGC GCCGAAGAGT CAACTCGCCG TAGTCTGGTG GCTAGTGGTG ACCGCTCTGA ACGTGTGCGT ACCTACAACT TCCCGCAGGG TCGCGTGAGT GAACACCGTA TCAACTTAAC CTTATATCGC TTGAACGAAG TGATGGAAGG GGACTTAGAC GCGATTTTAG GACCACTGAT GCAAGAGCAT CAGGCAGATT TGTTGGCCGC ACTTGCTGAC GAGCAGGGGT AA
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Protein sequence | MKESVIRKLE GLLERNEEVL ALLGDASVIA DQDRFRALSK EYSQLEEVVA GFKAYQQAQA DLESAKEMLE EDDAEMREMA QEEIKAAKVE LERLEAELQI LLLPKDPNDD TNAFIEIRAG AGGDEAAIFA GDLFRMYSRY AEANRWQLEI MSSNEGEHGG FKEIIVKVSG EGAYGKLKFE SGGHRVQRVP ETESQGRVHT SAVTVVVMHE VPEAEAISIN PADLKVDTFR SSGAGGQHVN KTDSAIRITH IPTGIVVECQ DQRSQHKNRA QAMSVLAARI QAVEDEKRRS AEESTRRSLV ASGDRSERVR TYNFPQGRVS EHRINLTLYR LNEVMEGDLD AILGPLMQEH QADLLAALAD EQG
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